Bioconductor Sailfish

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deseq2 sailfish tximport

updated 2.8 years ago by IUH • 0 • written 8.7 years ago by stan • 0

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tximport sailfish rnaseq

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by lina.faller ▴ 10

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tximport sailfish

9.7 years ago sjmonkley ▴ 40

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deseq2 sailfish differential gene expression

updated 11.3 years ago by Simon Anders ★ 3.8k • written 11.3 years ago by jceledon • 0

4 results • Page 1 of 1

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Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k

Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…

Votes

Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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