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sailfish
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How to get DESeq2 sizefactors from data imported using tximport
deseq2
sailfish
tximport
updated 11 months ago by
IUH
• 0 • written 6.8 years ago by
stan
• 0
0
votes
6
replies
1.5k
views
Using tximport to read in data from sailfish experiment
tximport
sailfish
rnaseq
updated 7.5 years ago by
Michael Love
41k • written 7.5 years ago by
lina.faller
• 0
1
vote
5
replies
1.4k
views
Help inputing sailfish TPM files into tximport
tximport
sailfish
7.8 years ago
sjmonkley
▴ 40
7
votes
7
replies
3.1k
views
Using Sailfish estimated read-counts for DESeq2 analysis
deseq2
sailfish
differential gene expression
updated 9.4 years ago by
Simon Anders
★ 3.7k • written 9.4 years ago by
jceledon
• 0
4 results • Page
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Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Hi, Thank you very much for your answer. It's true that I only used 6 samples for this analysis, which is consistent with your explanation…
Comment: Error using champ.import
by
shilpa
• 0
I'm having same issues too. Did anyone manage to resolve it?
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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