Bioconductor Sailfish

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deseq2 sailfish tximport

updated 6 months ago by IUH • 0 • written 6.4 years ago by stan • 0

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tximport sailfish rnaseq

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by lina.faller • 0

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tximport sailfish

7.4 years ago sjmonkley ▴ 40

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deseq2 sailfish differential gene expression

updated 9.0 years ago by Simon Anders ★ 3.7k • written 9.0 years ago by jceledon • 0

4 results • Page 1 of 1

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Comment: Ensembl down??? by James W. MacDonald 64k

I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…

Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k

I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…

Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …

Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0

Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…

Votes

Answer: biomaRt not working - lazy table error

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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Popular Question to Robert Castelo ★ 3.0k