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Comment: voom flips the sign relative to log(cpm)
by
Gordon Smyth
43k
Cross posted to Biostars https://www.biostars.org/p/9490039/
Answer: voom flips the sign relative to log(cpm)
by
Gordon Smyth
43k
The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…
Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading
by
Michael Love
34k
The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.
Comment: At least one covariate is confounded with batch! Please remove confounded covari
by
James W. MacDonald
58k
The error you get from `ComBat` comes from the test
```
qr(design)$rank < ncol(design)
```
And inside of `nonEstimable` is, as one might …
Comment: Understanding output of Negative Binomial in DESeq2
by
swbarnes2
▴
850
Cross posted at Biostars:
https://www.biostars.org/p/9490151/
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