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seqgsea
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1.2k
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Including sva results in SeqGSEA with data with batch effect
limma
deseq2
seqgsea
sva
deseq
5.7 years ago
kentfung
▴ 20
0
votes
1
reply
1.1k
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install SeqGSEA problem
seqgsea
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
jial2
• 0
0
votes
1
reply
1.3k
views
accounting for gene length with SeqGSEA
goseq
SeqGSEA
goseq
SeqGSEA
updated 9.4 years ago by
Xi Wang
• 0 • written 11.8 years ago by
Julie Leonard
▴ 110
0
votes
3
replies
2.1k
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Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 11.0 years ago by
Steve Lianoglou
★ 13k • written 11.0 years ago by
Leif Väremo
▴ 70
0
votes
5
replies
3.8k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 11.0 years ago by
Julian Gehring
★ 1.3k • written 11.0 years ago by
enricoferrero
▴ 680
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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