Bioconductor ShRNA

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edger shrna

8.9 years ago sirintra ▴ 10

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shrna edger deseq2 differential expression normalized counts

9.5 years ago Jane Merlevede ▴ 90

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1.3k

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limma gmap shRNA dropout screen

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by Anna Dvorkin ▴ 40

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edgeR processamplicons shrna

updated 10.1 years ago by thomas.leete • 0 • written 10.3 years ago by Anne Deslattes Mays ▴ 10

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3.2k

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shRNAseq edgeR shRNA

updated 10.3 years ago by Gordon Smyth 53k • written 10.3 years ago by KB ▴ 50

5 results • Page 1 of 1

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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

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Answer: Incosistencies in buildSNNGraph() function

Answer: Where do the filename come from in the LOLA datasets?

Bioconductor Maintainer Application

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

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Popular Question to Lluís Revilla Sancho ▴ 760