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shRNA
•
reset
0
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2
replies
1.5k
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Using edgeR for small shRNA-seq screen analysis
edger
shrna
7.2 years ago
sirintra
▴ 10
2
votes
2
replies
1.9k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
7.8 years ago
Jane Merlevede
▴ 90
1
vote
1
reply
979
views
limma for shRNA dropout screen analysis?
limma
gmap
shRNA
dropout screen
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
Anna Dvorkin
▴ 40
4
votes
4
replies
1.6k
views
edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR
processamplicons
shrna
updated 8.5 years ago by
thomas.leete
• 0 • written 8.6 years ago by
Anne Deslattes Mays
▴ 10
0
votes
5
replies
2.8k
views
example fastq file, sampleAnnotaition and Hairpin file for shRNAseq/EdgeR tool
shRNAseq
edgeR
shRNA
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
KB
▴ 50
5 results • Page
1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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