Bioconductor Snpchip

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snpchip microarray affy

9.6 years ago Sean Davis 21k

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Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO

updated 10.4 years ago by James W. MacDonald 67k • written 10.4 years ago by Guest User ★ 13k

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PROcess SNPchip crlmm PROcess SNPchip crlmm

12.9 years ago Rafiq S. ▴ 20

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Proteomics SNPchip Proteomics SNPchip

updated 13.0 years ago by Rob Scharpf ▴ 250 • written 13.0 years ago by Francesco Mancuso ▴ 110

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SNP geneplotter SNPchip SNP geneplotter SNPchip

updated 14.4 years ago by Vincent J. Carey, Jr. 6.7k • written 14.4 years ago by Min-Han Tan ▴ 40

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

15.5 years ago Min-Han Tan ▴ 40

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SNP SNPchip SNP SNPchip

16.1 years ago Laura Rodriguez Murillo ▴ 60

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SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip

updated 18.1 years ago by Rob Scharpf ▴ 250 • written 18.1 years ago by Justin Borevitz ▴ 170

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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