Bioconductor Snpchip

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snpchip microarray affy

10.6 years ago Sean Davis 21k

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1.7k

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Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO

updated 11.4 years ago by James W. MacDonald 68k • written 11.4 years ago by Guest User ★ 13k

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PROcess SNPchip crlmm PROcess SNPchip crlmm

13.8 years ago Rafiq S. ▴ 20

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1.2k

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Proteomics SNPchip Proteomics SNPchip

updated 14.0 years ago by Rob Scharpf ▴ 250 • written 14.0 years ago by Francesco Mancuso ▴ 110

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SNP geneplotter SNPchip SNP geneplotter SNPchip

updated 15.3 years ago by Vincent J. Carey, Jr. 6.7k • written 15.3 years ago by Min-Han Tan ▴ 40

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

16.5 years ago Min-Han Tan ▴ 40

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SNP SNPchip SNP SNPchip

17.0 years ago Laura Rodriguez Murillo ▴ 60

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1.7k

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SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip

updated 19.0 years ago by Rob Scharpf ▴ 250 • written 19.0 years ago by Justin Borevitz ▴ 170

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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