Bioconductor Snpchip

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snpchip microarray affy

10.5 years ago Sean Davis 21k

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Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO

updated 11.3 years ago by James W. MacDonald 68k • written 11.3 years ago by Guest User ★ 13k

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PROcess SNPchip crlmm PROcess SNPchip crlmm

13.7 years ago Rafiq S. ▴ 20

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Proteomics SNPchip Proteomics SNPchip

updated 13.9 years ago by Rob Scharpf ▴ 250 • written 13.9 years ago by Francesco Mancuso ▴ 110

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SNP geneplotter SNPchip SNP geneplotter SNPchip

updated 15.2 years ago by Vincent J. Carey, Jr. 6.7k • written 15.2 years ago by Min-Han Tan ▴ 40

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

16.4 years ago Min-Han Tan ▴ 40

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SNP SNPchip SNP SNPchip

16.9 years ago Laura Rodriguez Murillo ▴ 60

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SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip

updated 18.9 years ago by Rob Scharpf ▴ 250 • written 18.9 years ago by Justin Borevitz ▴ 170

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Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0

The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Comment: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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