Bioconductor Snpchip

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snpchip microarray affy

10.0 years ago Sean Davis 21k

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Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO

updated 10.8 years ago by James W. MacDonald 68k • written 10.8 years ago by Guest User ★ 13k

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PROcess SNPchip crlmm PROcess SNPchip crlmm

13.2 years ago Rafiq S. ▴ 20

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Proteomics SNPchip Proteomics SNPchip

updated 13.4 years ago by Rob Scharpf ▴ 250 • written 13.4 years ago by Francesco Mancuso ▴ 110

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SNP geneplotter SNPchip SNP geneplotter SNPchip

updated 14.7 years ago by Vincent J. Carey, Jr. 6.7k • written 14.7 years ago by Min-Han Tan ▴ 40

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

15.9 years ago Min-Han Tan ▴ 40

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SNP SNPchip SNP SNPchip

16.4 years ago Laura Rodriguez Murillo ▴ 60

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1.6k

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SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip

updated 18.4 years ago by Rob Scharpf ▴ 250 • written 18.4 years ago by Justin Borevitz ▴ 170

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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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