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snpchip
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0
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924
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Support for MouseDivGeno arrays in Bioconductor
snpchip
microarray
affy
9.2 years ago
Sean Davis
21k
0
votes
2
replies
1.4k
views
Can my problem be addressed with Bioconductor?
Genetics
GOstats
SNPchip
topGO
Genetics
GOstats
SNPchip
topGO
updated 10.0 years ago by
James W. MacDonald
66k • written 10.0 years ago by
Guest User
★ 13k
0
votes
4
replies
2.4k
views
genotyping output files
PROcess
SNPchip
crlmm
PROcess
SNPchip
crlmm
12.4 years ago
Rafiq S.
▴ 20
0
votes
1
reply
924
views
Possible bug in SNPchip
Proteomics
SNPchip
Proteomics
SNPchip
updated 12.6 years ago by
Rob Scharpf
▴ 250 • written 12.6 years ago by
Francesco Mancuso
▴ 110
0
votes
3
replies
2.0k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP
geneplotter
SNPchip
SNP
geneplotter
SNPchip
updated 13.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.9 years ago by
Min-Han Tan
▴ 40
0
votes
0
replies
1.3k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.1 years ago
Min-Han Tan
▴ 40
0
votes
7
replies
1.5k
views
how to put together 600 files from the 5.0 Affy SNPchip
SNP
SNPchip
SNP
SNPchip
15.6 years ago
Laura Rodriguez Murillo
▴ 60
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
updated 17.6 years ago by
Rob Scharpf
▴ 250 • written 17.6 years ago by
Justin Borevitz
▴ 170
8 results • Page
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Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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