Bioconductor Snpchip

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snpchip microarray affy

10.4 years ago Sean Davis 21k

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Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO

updated 11.3 years ago by James W. MacDonald 68k • written 11.3 years ago by Guest User ★ 13k

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PROcess SNPchip crlmm PROcess SNPchip crlmm

13.7 years ago Rafiq S. ▴ 20

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Proteomics SNPchip Proteomics SNPchip

updated 13.8 years ago by Rob Scharpf ▴ 250 • written 13.8 years ago by Francesco Mancuso ▴ 110

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SNP geneplotter SNPchip SNP geneplotter SNPchip

updated 15.2 years ago by Vincent J. Carey, Jr. 6.7k • written 15.2 years ago by Min-Han Tan ▴ 40

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

16.4 years ago Min-Han Tan ▴ 40

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SNP SNPchip SNP SNPchip

16.9 years ago Laura Rodriguez Murillo ▴ 60

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SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip

updated 18.9 years ago by Rob Scharpf ▴ 250 • written 18.9 years ago by Justin Borevitz ▴ 170

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Comment: DESeq2 interactions by Michael • 0

Brilliant, thank you!

Answer: readBam vs read_bam_insert_metrics by lincolnprice964 ▴ 10

Yes read_bam_insert_metrics() can take input directly from a BAM file or from an object created with readBam(). Use whichever fits best in …

Comment: DESeq2 interactions by lincolnprice964 ▴ 10

If you want HP vs CNP directly, set up the interaction model: dds <- DESeqDataSetFromTximport(genes.salmon, coldata, ~ pollution + temp + …

Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

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Comment: DESeq2 interactions

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

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