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snpchip
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Support for MouseDivGeno arrays in Bioconductor
snpchip
microarray
affy
9.1 years ago
Sean Davis
21k
0
votes
2
replies
1.3k
views
Can my problem be addressed with Bioconductor?
Genetics
GOstats
SNPchip
topGO
Genetics
GOstats
SNPchip
topGO
updated 9.9 years ago by
James W. MacDonald
65k • written 9.9 years ago by
Guest User
★ 13k
0
votes
4
replies
2.3k
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genotyping output files
PROcess
SNPchip
crlmm
PROcess
SNPchip
crlmm
12.3 years ago
Rafiq S.
▴ 20
0
votes
1
reply
911
views
Possible bug in SNPchip
Proteomics
SNPchip
Proteomics
SNPchip
updated 12.5 years ago by
Rob Scharpf
▴ 250 • written 12.5 years ago by
Francesco Mancuso
▴ 110
0
votes
3
replies
1.9k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP
geneplotter
SNPchip
SNP
geneplotter
SNPchip
updated 13.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.8 years ago by
Min-Han Tan
▴ 40
0
votes
0
replies
1.3k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.0 years ago
Min-Han Tan
▴ 40
0
votes
7
replies
1.4k
views
how to put together 600 files from the 5.0 Affy SNPchip
SNP
SNPchip
SNP
SNPchip
15.5 years ago
Laura Rodriguez Murillo
▴ 60
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
SNP
Annotation
Yeast
Biobase
SNPchip
updated 17.5 years ago by
Rob Scharpf
▴ 250 • written 17.5 years ago by
Justin Borevitz
▴ 170
8 results • Page
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Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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