Biostar Somaticsignatures mutationcontext

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somaticsignatures mutationcontext

updated 6.5 years ago by Julian Gehring ★ 1.3k • written 6.5 years ago by sergio.martinezcuesta ▴ 10

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SomaticSignatures mutationContext VRanges

updated 6.7 years ago by Julian Gehring ★ 1.3k • written 6.7 years ago by tesa.severson ▴ 10

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software error somaticsignatures somaticsignatures mutationcontext

6.2 years ago jpluta26 • 0

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somaticsignatures somaticsignatures mutationcontext

updated 6.1 years ago by Julian Gehring ★ 1.3k • written 6.1 years ago by jolligoodfellow • 0

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somaticsignatures somaticsignatures mutationcontext

updated 6.4 years ago by Julian Gehring ★ 1.3k • written 6.4 years ago by mathieu.bourgey • 0

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Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…

Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0

I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…

Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0

Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…

Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k

Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…

Comment: Handling of missing values in limma by Gordon Smyth 45k

limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…

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Answer: Quantile Normalization after rma or not?

Answer: Using featureCounts and downloading Rsubread

Answer: different results in DESeq2 when comparing groups in two ways

Comment: edgeR: the F-statistics changed after removing lowly expressed gene

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