Biostar VRanges

Showing : VRanges • reset

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321

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somaticsignatures vranges readvcfasvranges

3.4 years ago guillaume.dachy • 0

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714

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variantannotation vcf readvcf vranges

updated 3.6 years ago by Michael Lawrence 11k • written 3.6 years ago by david.mas • 0

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565

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variantannotation VRanges R Rle

updated 3.6 years ago by Valerie Obenchain ★ 6.7k • written 3.6 years ago by Jayendra Shinde • 0

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1.1k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

4.5 years ago • updated 4.4 years ago guillaume.dachy • 0

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823

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vranges vcf to vranges

5.1 years ago Bogdan ▴ 620

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1.2k

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somaticsignatures vranges

updated 5.6 years ago by Julian Gehring ★ 1.3k • written 5.6 years ago by arsala521 ▴ 10

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970

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granges vranges readvcfasvranges somaticsignatures

updated 5.8 years ago by Michael Lawrence 11k • written 5.8 years ago by jpluta26 • 0

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1.4k

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SomaticSignatures mutationContext VRanges

updated 6.4 years ago by Julian Gehring ★ 1.3k • written 6.4 years ago by tesa.severson ▴ 10

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1.4k

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variantannotation vranges readvcf readvcfasvranges metadata

6.9 years ago summerela • 0

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2.1k

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variantannotation granges DNAStringSetList findoverlaps Vranges

6.9 years ago summerela • 0

10 results • Page 1 of 1

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Comment: LOC gene IDs for characterised genes in annotation files by Lan • 0

Hi Dr. MacDonald, thanks very much for your reply! I thought my question is very related to this post, so I piggybacked on here, but will t…

Comment: Differential Splicing using edgeR by James W. MacDonald 58k

I guess I don't understand your question. In the example, each row is the quantification for an exon for a given gene. Just like you have. …

Comment: Differential Splicing using edgeR by Assa Yeroslaviz ★ 1.5k

Thanks James, but this is exactly my question. I would like to understand how they quantify it in such a way, that they have the genes are…

Comment: Where can I find EnsDb.Hsapiens.v105? by jon.klonowski ▴ 20

I was using the `proteinToGenome()` command of the `ensembldb` package to be able to discern the genomic position of a premature terminal c…

Comment: Where can I find EnsDb.Hsapiens.v105? by jon.klonowski ▴ 20

Yup, my R is outdated by a single release and I cant get Bioconductor 3.14 because of that `>BiocManager::install()` outputs: Biocondu…

Votes

C: edgeR design matrix and contrasts: how to make contrast between groups that aren

Answer: Why is "SimpleList" not inheriting "list" ?

C: Reading gff files in R

A: Reading gff files in R

Comment: Warning messages on Apple M1 BigSur

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Scholar to James W. MacDonald 58k

Popular Question to Ou, Jianhong ★ 1.3k