Bioconductor VRanges

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somaticsignatures vranges readvcfasvranges

7.5 years ago guillaume.dachy • 0

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2.5k

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variantannotation vcf readvcf vranges

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by david.mas • 0

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1.7k

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variantannotation VRanges R Rle

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Jayendra Shinde • 0

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somaticsignatures somaticsignatures package readvcfasvranges vranges

8.5 years ago • updated 8.4 years ago guillaume.dachy • 0

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vranges vcf to vranges

9.1 years ago Bogdan ▴ 670

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somaticsignatures vranges

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by arsala521 ▴ 10

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2.1k

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granges vranges readvcfasvranges somaticsignatures

updated 9.9 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by jpluta26 • 0

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2.9k

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SomaticSignatures mutationContext VRanges

updated 10.4 years ago by Julian Gehring ★ 1.3k • written 10.5 years ago by tesa.severson ▴ 10

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variantannotation vranges readvcf readvcfasvranges metadata

11.0 years ago summerela • 0

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4.5k

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variantannotation granges DNAStringSetList findoverlaps Vranges

11.0 years ago summerela • 0

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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