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VRanges
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431
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Formal class VRanges versus Large VRanges
somaticsignatures
vranges
readvcfasvranges
4.4 years ago
guillaume.dachy
• 0
3
votes
4
replies
1.1k
views
Problem when transforming Platypus vcf to VRanges
variantannotation
vcf
readvcf
vranges
updated 4.6 years ago by
Michael Lawrence
11k • written 4.6 years ago by
david.mas
• 0
0
votes
2
replies
719
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 4.6 years ago by
Valerie Obenchain
★ 6.7k • written 4.6 years ago by
Jayendra Shinde
• 0
1
vote
2
replies
1.2k
views
Trouble while concatenating VRanges object ()
somaticsignatures
somaticsignatures package
readvcfasvranges
vranges
5.5 years ago • updated 5.4 years ago
guillaume.dachy
• 0
0
votes
3
replies
956
views
about VRanges and filtering somatic variants
vranges
vcf to vranges
6.1 years ago
Bogdan
▴ 660
1
vote
4
replies
1.4k
views
Converting VCF to VRanges
somaticsignatures
vranges
updated 6.6 years ago by
Julian Gehring
★ 1.3k • written 6.6 years ago by
arsala521
▴ 10
1
vote
2
replies
1.1k
views
Combining GRange/VRange objects
granges
vranges
readvcfasvranges
somaticsignatures
updated 6.8 years ago by
Michael Lawrence
11k • written 6.8 years ago by
jpluta26
• 0
3
votes
9
replies
1.6k
views
SomaticSignatures mutationContext (char ',') not in lookup table
SomaticSignatures mutationContext
VRanges
updated 7.4 years ago by
Julian Gehring
★ 1.3k • written 7.4 years ago by
tesa.severson
▴ 10
2
votes
3
replies
1.7k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
7.9 years ago
summerela
• 0
3
votes
5
replies
2.4k
views
Add Custom Annotations to Multi-Sample VCF with VariantAnnotation() package
variantannotation
granges
DNAStringSetList
findoverlaps
Vranges
7.9 years ago
summerela
• 0
10 results • Page
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Comment: cell_count column in SpatialExperiment Object
by
alan.ocallaghan
▴ 120
Of the columns there, sum and total both refer to the total number of transcripts per observation (per spot, presumably, for Visium data). …
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Comment: MA plot
Comment: MA plot
Comment: Combat and dds Object
Answer: How can I draw a barplot of complexheatmap according 'Tumor Type'
Comment: MA plot
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