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QuasR rnaseq alignment splicemap bowtie2

6.3 years ago Gabriella • 0

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SpliceMap QuasR RNAseq Alignment

updated 6.4 years ago by Hotz, Hans-Rudolf ▴ 400 • written 6.4 years ago by tarek.mohamed ▴ 10

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Answer: Can't Install ensembldb and EnsDb.Hsapiens.v86 by mbk0asis • 0

Error: package or namespace load failed for ‘AnnotationDbi’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[…

Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Wow, I give you a full solution **including** explanation of basics and why the error you see even come up, and you still complain. Are the…

Comment: Error while running DESeq2 by ATpoint ★ 1.3k

You don't need stringtie unless you want to assemble a transcriptome. Just use featureCounts to make your count matrix. It will do fine, an…

Comment: Error while running DESeq2 by srikar • 0

Thank you . I will look into it, and upon running sum(countData<0), out of 231780 elements, 231642 of those are below 0. I think it may be …

Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330

`names(pData(microarray))[1]<- "NEW_VAR"` works, what is the error you have ?

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Comment: Error while running DESeq2

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