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statistical test
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8
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4.7k
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Comparing between two differential expression analysis - two different fold changes
Deseq
deseq2
differential gene expression
rnaseq
statistical test
6.2 years ago
Marina
▴ 40
0
votes
6
replies
1.5k
views
Effect of biological variation on tests
biologicalreplicates
statistical test
updated 7.7 years ago by
Gordon Smyth
50k • written 16.6 years ago by
Yogi Sundaravadanam
▴ 320
2
votes
2
replies
893
views
DSS understanding delta option and posterior probability
posterior pobability
statistical test
theory
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
stephanie.rialle
• 0
0
votes
1
reply
872
views
diffHiC statistical test to check differences between conditions
diffHiC
statistical test
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
lazaris
• 0
4 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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