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Comment: Deseq2 Design
by
James W. MacDonald
67k
You could do that, but if we assume the within-group variability is similar across groups, you gain power by fitting a single model and ext…
Comment: Deseq2 Design
by
pm_25
•
0
Thanks James, I went ahead and fit the model for cell means as so:
```r
dds <- DESeqDataSetFromTximport(txi, colData = sampleTable,~Condit…
Answer: Build error on kunpeng2 Linux aarch64
by
James W. MacDonald
67k
This isn't the place for developer questions. Please use the developer listserv at bioc-devel@r-project.org instead.
Also, you might wan…
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
by
James W. MacDonald
67k
You should use `useEnsembl` as the error recommends.
```
> library(biomaRt)
> mart <- useEnsembl("ensembl", "rnorvegicus_gene_ensembl")
> …
Comment: Deseq2 Design
by
James W. MacDonald
67k
The other thing I forgot to mention is that you need to specify a cell means model to `DESeq`. Here's an example.
```
> library(DESeq2)
> …
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