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syntenet
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4
replies
359
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Error in classify_gene_pairs
syntenet
doubletrouble
4 months ago
hfyuan2016
• 0
0
votes
1
reply
320
views
Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 4 months ago by
Fabricio Almeida-Silva
▴ 40 • written 5 months ago by
Sujeevan
• 0
0
votes
1
reply
354
views
question about data processing for syntenet
syntenet
updated 4 months ago by
Fabricio Almeida-Silva
▴ 40 • written 6 months ago by
Sujeevan
• 0
2
votes
8
replies
1.5k
views
Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 6 months ago by
Sujeevan
• 0 • written 19 months ago by
lwanderson8c
• 0
0
votes
2
replies
669
views
MIcrosynteny block information - Syntenet
syntenet
microsynteny
blocks
synteny
written 12 months ago by
Alexandros
• 0
0
votes
1
reply
675
views
Syntenet application to bacterial genome and file processing
syntenet
Bacteria
synteny
updated 7 months ago by
Fabricio Almeida-Silva
▴ 40 • written 9 months ago by
kluongni
• 0
1
vote
10
replies
2.3k
views
Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 20 months ago by
Alexandros
• 0
0
votes
3
replies
659
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
12 months ago
Alexandros
• 0
8 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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