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syntenet
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Error in classify_gene_pairs
syntenet
doubletrouble
24 months ago
hfyuan2016
• 0
0
votes
1
reply
654
views
Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 24 months ago by
Fabricio Almeida-Silva
▴ 40 • written 2.1 years ago by
Sujeevan
• 0
0
votes
1
reply
745
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question about data processing for syntenet
syntenet
updated 24 months ago by
Fabricio Almeida-Silva
▴ 40 • written 2.2 years ago by
Sujeevan
• 0
2
votes
8
replies
2.5k
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 2.2 years ago by
Sujeevan
• 0 • written 3.2 years ago by
lwanderson8c
• 0
0
votes
2
replies
1.2k
views
MIcrosynteny block information - Syntenet
syntenet
microsynteny
blocks
synteny
written 2.6 years ago by
Alexandros
• 0
0
votes
1
reply
1.1k
views
Syntenet application to bacterial genome and file processing
syntenet
Bacteria
synteny
updated 2.2 years ago by
Fabricio Almeida-Silva
▴ 40 • written 2.4 years ago by
kluongni
• 0
1
vote
10
replies
3.2k
views
Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 3.3 years ago by
Alexandros
• 0
0
votes
3
replies
1.4k
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
2.7 years ago
Alexandros
• 0
8 results • Page
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Recent ...
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Comment: tximeta cannot open annotation gtf?
by
Michael Love
43k
Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…
Answer: tximeta cannot open annotation gtf?
by
ATpoint
★ 5.0k
> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
Answer: GSEA error
by
James W. MacDonald
68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Votes
Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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