Showing : syntenet • reset
2
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8
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1.7k
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 11 months ago by • 0 • written 23 months ago by • 0
1
vote
10
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2.5k
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 2.0 years ago by • 0
0
votes
1
reply
809
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Syntenet application to bacterial genome and file processing
syntenet Bacteria synteny
updated 11 months ago by ▴ 40 • written 13 months ago by • 0
0
votes
1
reply
469
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question about data processing for syntenet
syntenet
updated 9 months ago by ▴ 40 • written 11 months ago by • 0
0
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1
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427
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Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 9 months ago by ▴ 40 • written 10 months ago by • 0
0
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2
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808
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MIcrosynteny block information - Syntenet
syntenet microsynteny blocks synteny
written 17 months ago by • 0
0
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4
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483
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Error in classify_gene_pairs
syntenet doubletrouble
9 months ago hfyuan2016 • 0
0
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3
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770
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
17 months ago Alexandros • 0
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Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by ATpoint ★ 4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by swbarnes2 ★ 1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output by Aimee • 0
Hi Gordon, Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Answer: Can we get beta values with DMRcate package by James W. MacDonald 67k
If you get an error that says ``` Error in getCollapsedBetas(myAnnotation) : could not find function "getCollapsedBetas" ``` It …
Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.6k
I think this already happened, see https://github.com/nf-core/rnasplice/issues/162
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
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