Showing : syntenet • reset
0
votes
4
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841
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Error in classify_gene_pairs
syntenet doubletrouble
23 months ago hfyuan2016 • 0
0
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1
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649
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Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 23 months ago by ▴ 40 • written 2.1 years ago by • 0
0
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1
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741
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question about data processing for syntenet
syntenet
updated 23 months ago by ▴ 40 • written 2.1 years ago by • 0
2
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8
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2.5k
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 2.1 years ago by • 0 • written 3.1 years ago by • 0
0
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2
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1.2k
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MIcrosynteny block information - Syntenet
syntenet microsynteny blocks synteny
written 2.6 years ago by • 0
0
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1
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1.1k
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Syntenet application to bacterial genome and file processing
syntenet Bacteria synteny
updated 2.2 years ago by ▴ 40 • written 2.3 years ago by • 0
1
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10
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3.2k
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 3.2 years ago by • 0
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3
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1.4k
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
2.6 years ago Alexandros • 0
8 results • Page 1 of 1
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Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
It looks to me that everything is working ok and limpa has done the right thing. You data has a lot of missing values, with the proportion …
Answer: Can sample-level weights be used when analysing GSVA scores in limma? by Gordon Smyth 53k
Yes, you could probably use the voom sample weights for an analysis of the GSVA scores for the same data, although I have never tried it. …
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160
You are correct. Thank you for noticing some of this 'pollution' with "_2" suffixes was unnecessary. I posted an updated SILVA classifier …
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Votes
A: The meaning of results produced by the bamQC function implemented in the ATACseq
The meaning of results produced by the bamQC function implemented in the ATACseqQC
A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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