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tcgaworkflow
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Postdoc
TCGAWorkflow
11 weeks ago
sameerahmadguru
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Gene A mutation vs Gene B amplification using TCGA datasets
TCGAWorkflow
12 months ago
Begin-R
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tcga expression data
TCGAWorkflow
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
fatemehfakhari74
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Query on TCGA
TCGAbiolinks
TCGAWorkflow
19 months ago
hemangininaik09
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Identifying presence of certain genes
DifferentialExpression
TCGAWorkflow
2.5 years ago
Sam
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Comment: minfi::read.metharray.exp
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clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
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Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
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