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teqc
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reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not seem to be unique
TEQC
6.8 years ago
tangming2005
▴ 190
1
vote
5
replies
3.1k
views
problems regarding installing TEQC package
TEQC
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
xiang.zuo
• 0
0
votes
4
replies
1.5k
views
extract data from RangedData table (IRange TEQC packages)
TEQC
TEQC
updated 12.1 years ago by
Michael Lawrence
★ 11k • written 12.1 years ago by
nac
▴ 280
0
votes
2
replies
1.2k
views
RangedData change space information
Cancer
TEQC
Cancer
TEQC
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.1 years ago by
Radhouane Aniba
▴ 240
0
votes
1
reply
1.0k
views
TEQC package very slow
Coverage
TEQC
Coverage
TEQC
11.9 years ago
nac
▴ 280
0
votes
1
reply
1.1k
views
TEQC - new version Bioc - problem with IRanges
teqc
iranges
updated 5.9 years ago by
m.hummel
▴ 10 • written 5.9 years ago by
msourdeix
• 0
0
votes
1
reply
1.4k
views
Error in solveUserSEW0 when using get.targets in TEQC
TEQC
TEQC
updated 13.2 years ago by
Hervé Pagès
16k • written 13.2 years ago by
Johanna Hasmats
▴ 20
0
votes
0
replies
1.2k
views
TEQC see all the reads with a given coverage
Coverage
TEQC
Coverage
TEQC
12.0 years ago
nac
▴ 280
8 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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