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teqc
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reads2pairs from TEQC error:Error in reads2pairs(reads) : read pair IDs do not seem to be unique
TEQC
6.8 years ago • updated 6.7 years ago
tangming2005
▴ 190
1
vote
5
replies
3.0k
views
problems regarding installing TEQC package
TEQC
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
xiang.zuo
• 0
0
votes
4
replies
1.5k
views
extract data from RangedData table (IRange TEQC packages)
TEQC
TEQC
updated 12.0 years ago by
Michael Lawrence
★ 11k • written 12.0 years ago by
nac
▴ 280
0
votes
2
replies
1.2k
views
RangedData change space information
Cancer
TEQC
Cancer
TEQC
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.1 years ago by
Radhouane Aniba
▴ 240
0
votes
1
reply
1.0k
views
TEQC package very slow
Coverage
TEQC
Coverage
TEQC
11.9 years ago
nac
▴ 280
0
votes
1
reply
1.1k
views
TEQC - new version Bioc - problem with IRanges
teqc
iranges
updated 5.8 years ago by
m.hummel
▴ 10 • written 5.9 years ago by
msourdeix
• 0
0
votes
1
reply
1.4k
views
Error in solveUserSEW0 when using get.targets in TEQC
TEQC
TEQC
updated 13.2 years ago by
Hervé Pagès
16k • written 13.2 years ago by
Johanna Hasmats
▴ 20
0
votes
0
replies
1.2k
views
TEQC see all the reads with a given coverage
Coverage
TEQC
Coverage
TEQC
12.0 years ago
nac
▴ 280
8 results • Page
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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