Showing : timecourse • reset
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A question on microarray timeseries data
TimeCourse timecourse TimeCourse timecourse
16.6 years ago Anjan Purkayastha ▴ 90
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Finding transcription factors controlling hk1 gene In timecourse experiment
Transcription TimeCourse affy timecourse Transcription TimeCourse affy timecourse
updated 16.7 years ago by ▴ 110 • written 16.7 years ago by ▴ 10
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Timecourse package
Microarray TimeCourse timecourse Microarray TimeCourse timecourse
updated 16.8 years ago by ▴ 440 • written 16.8 years ago by ▴ 380
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Error in contrast.fit, LIMMA
TimeCourse timecourse TimeCourse timecourse
updated 16.9 years ago by ★ 1.1k • written 16.9 years ago by ▴ 10
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of limma and superfluous arrays
TimeCourse probe limma timecourse TimeCourse probe limma timecourse
17.9 years ago Yannick Wurm ▴ 220
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of limma and superfluous arrays
TimeCourse probe limma timecourse TimeCourse probe limma timecourse
17.9 years ago Gordon Smyth 53k
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of limma and superfluous arrays
TimeCourse limma timecourse TimeCourse limma timecourse
17.9 years ago Yannick Wurm ▴ 220
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2 conditions time series with different number of sample at each time point
TimeCourse limma timecourse maanova TimeCourse limma timecourse maanova
17.9 years ago Naomi Altman ★ 6.0k
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timecourse + factorial + replicates in LIMMA
TimeCourse timecourse TimeCourse timecourse
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ▴ 70
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error with timecourse package
TimeCourse timecourse TimeCourse timecourse
18.7 years ago Ana Conesa ▴ 140
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Time course cDNA two color array analysis
TimeCourse limma timecourse maSigPro TimeCourse limma timecourse maSigPro
18.9 years ago Marcelo Laia ▴ 450
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Spot duplicate in timecourse package and "missing" values
TimeCourse limma timecourse TimeCourse limma timecourse
updated 18.9 years ago by ▴ 440 • written 18.9 years ago by ▴ 450
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[Bioc-devel] Appropriate linear model analysis for microarray time course comparison
TimeCourse limma timecourse oligo TimeCourse limma timecourse oligo
19.6 years ago Sean Davis 21k
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timecourse pkg question
TimeCourse convert timecourse TimeCourse convert timecourse
19.6 years ago aaron.j.mackey@gsk.com ▴ 70
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hopach package for clustering
Clustering TimeCourse timecourse Clustering TimeCourse timecourse
updated 19.8 years ago by ▴ 780 • written 19.8 years ago by ▴ 250
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.8 years ago McGee, Monnie ▴ 300
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
19.9 years ago • updated 19.8 years ago Pete ▴ 70
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[TimeCourse Package] Warnings message
Genetics TimeCourse timecourse Genetics TimeCourse timecourse
updated 19.9 years ago by ▴ 440 • written 19.9 years ago by ▴ 770
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[OT] Help to creating a function to automate the plotProfile function in timecourse
TimeCourse timecourse TimeCourse timecourse
updated 20.2 years ago by ▴ 320 • written 20.2 years ago by ▴ 770
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Analysing a timecourse/loop experiment without replication with limma
TimeCourse limma limmaGUI timecourse TimeCourse limma limmaGUI timecourse
updated 20.3 years ago by ★ 6.0k • written 20.3 years ago by ▴ 340
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normalization question (conceptual)
Normalization TimeCourse timecourse Normalization TimeCourse timecourse
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 30
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design matrix for timecourse experiment
TimeCourse limma timecourse TimeCourse limma timecourse
21.7 years ago Gareth Bloomfield ▴ 10
122 results • Page 3 of 3
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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