updated 5.8 years ago by
shepherl
4.3k
•
written 5.8 years ago by
ashwinmenon1994
•
0
0
votes
1
reply
971
views
Recent ...
Replies
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
•
0
Hi @atpoint Thanks for the information.
Could you please expand on when to use adjusted p-values vs nominal p-values.
My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Awards
• All
Popular Question to
Lluís Revilla Sancho
▴
760
Popular Question to
nromerov
•
0
Popular Question to
Thomas Girke
★
1.7k
Teacher to
Gordon Smyth
53k
Popular Question to
Stephanie M. Gogarten
▴
890
Locations
• All
United States, 50 minutes ago
China, 1 hour ago
France, 1 hour ago
The city by the bay, 3 hours ago
France, 4 hours ago
United States, 50 minutes ago
China, 1 hour ago
France, 1 hour ago
The city by the bay, 3 hours ago
France, 4 hours ago
Traffic: 966 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6