Bioconductor Tpp

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271

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TPP

updated 14 days ago by James W. MacDonald 68k • written 15 days ago by flowreen.shikwana • 0

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422

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TPP

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by Alexandre Mahé • 0

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942

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TPP NPARC

updated 4.4 years ago by nils.kurzawa ▴ 20 • written 4.4 years ago by yangwanqi • 0

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590

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TPP

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by esmaeil.dehghan • 0

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801

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software error TPP

updated 6.2 years ago by shepherl 4.1k • written 6.2 years ago by kkim369 • 0

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3.0k

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TPP

7.6 years ago • updated 7.5 years ago Bioinformatics ▴ 30

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1.5k

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TPP

updated 7.6 years ago by Pariksheet Nanda ▴ 120 • written 7.6 years ago by Nemo ▴ 80

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1.3k

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TPP

updated 8.5 years ago by dchilds ▴ 40 • written 8.5 years ago by Bioinformatics ▴ 30

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tpp

updated 8.5 years ago by dchilds ▴ 40 • written 8.5 years ago by Bioinformatics ▴ 30

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1.3k

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TPP

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Bioinformatics ▴ 30

10 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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