Bioconductor Tpp

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TPP

updated 4 months ago by James W. MacDonald 67k • written 4 months ago by Alexandre Mahé • 0

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TPP NPARC

updated 4.2 years ago by nils.kurzawa ▴ 20 • written 4.2 years ago by yangwanqi • 0

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TPP

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by esmaeil.dehghan • 0

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software error TPP

updated 6.0 years ago by shepherl 4.1k • written 6.0 years ago by kkim369 • 0

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TPP

7.4 years ago Bioinformatics ▴ 30

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TPP

updated 7.4 years ago by Pariksheet Nanda ▴ 120 • written 7.4 years ago by Nemo ▴ 80

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TPP

updated 8.3 years ago by dchilds ▴ 40 • written 8.3 years ago by Bioinformatics ▴ 30

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tpp

updated 8.3 years ago by dchilds ▴ 40 • written 8.3 years ago by Bioinformatics ▴ 30

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TPP

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by Bioinformatics ▴ 30

9 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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