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tpp
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2
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14
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2.6k
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hyperlink issue with a R package
TPP
6.7 years ago • updated 6.6 years ago
Bioinformatics
▴ 30
2
votes
3
replies
1.1k
views
error using the TTP package
TPP
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
Bioinformatics
▴ 30
1
vote
2
replies
1.1k
views
how to obtain the curve fitting for all proteins
tpp
updated 7.6 years ago by
dchilds
▴ 40 • written 7.6 years ago by
Bioinformatics
▴ 30
0
votes
2
replies
1.0k
views
How can I find which proteins are unaffected, stabilized or destabilized and graph them together?
TPP
updated 7.6 years ago by
dchilds
▴ 40 • written 7.6 years ago by
Bioinformatics
▴ 30
1
vote
1
reply
1.3k
views
what is this error for TPP package
TPP
updated 6.7 years ago by
Pariksheet Nanda
▴ 120 • written 6.7 years ago by
Nemo
▴ 80
0
votes
1
reply
377
views
TPP- data input
TPP
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
esmaeil.dehghan
• 0
0
votes
1
reply
698
views
TPP and NPARC: A problem about the conversion of data frame.
TPP
NPARC
updated 3.5 years ago by
nils.kurzawa
▴ 20 • written 3.5 years ago by
yangwanqi
• 0
0
votes
0
replies
630
views
TPP error message " The names of the data objects in 'data' differ from the names given in the Experiment column of 'configTable'."
software error
TPP
updated 5.3 years ago by
shepherl
3.9k • written 5.3 years ago by
kkim369
• 0
8 results • Page
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
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