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Comment: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
Your question is a bit cryptic, Rich. Are you trying to rewrite the voomByGroup() function yourself, to incorporate functionality that the …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
Raya
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0
Thank you for pointing this out James, it works now!
Answer: HMP_2019_t2d data origin
by
Levi Waldron
★
1.1k
Dear @pleiramalls, @blann,
sorry for the delay! We obtained fastq files for the HMP2 study from the HMP data portal (https://portal.hmpda…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★
4.9k
I told you why, because you aggregate all cells into a single pseudobulk. You then need a pseudobulk per worm, but that assumes that in the…
Comment: Can NanoString data be analyzed using DESeq2?
by
ATpoint
★
4.9k
There is nothing code-wise specific for Nanostring. The same workflow and code applies as if it was RNA-seq, ChIP-seq, any count dataset. R…
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