Bioconductor Txdb.dmelanogaster.ucsc.dm3.ensgene

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TxDb.Dmelanogaster.UCSC.dm3.ensGene

updated 14 months ago by ATpoint ★ 4.5k • written 14 months ago by Gh • 0

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Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178 by ATpoint ★ 4.5k

My recommendation would be to first translate probe identifiers to Ensembl gene IDs, for example with biomaRt, and then take the intersect.…

Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

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Dotplot from enricher outputting very few genes

Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

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