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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
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Michael Love
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For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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xiaofeiwang198266
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0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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Hervé Pagès
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> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb)
Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript
by
mat149
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80
Hey,
In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
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Gordon Smyth
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Since the intra-block correlation is negative, it would be best to remove `block` from the model.
My experience with genetically identical…
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