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DESeq2 Transcriptomics tximport deseq txi

updated 2.3 years ago by Dario Strbenac ★ 1.6k • written 2.3 years ago by Hicham ▴ 10

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TxDb.Sscrofa.UCSC.susScr11.refGene TxDb txi

updated 2.5 years ago by James W. MacDonald 68k • written 2.5 years ago by Luke • 0

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tx2gene txi error

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by eliztran • 0

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Comment: Check removeBatchEffect effectiveness by massimo • 0

Sorry for the delay, here it is my code which displays the warning message: Normalization: countsdge <- DGEList(counts, timepoint, ge…

Answer: WGCNA coupled with differential expression analysis: question about baseline mod by phylliskeller162 • 0

My reflexes are challenged every time I play [Dinosaur Game][1]! [1]: https://dinosaur-game.io

Answer: blockwiseModule crashes in the end and doesn't generate modules by phylliskeller162 • 0

Crave adrenaline, music, and pixel-perfect jumps? [Geometry Dash][1] delivers it all in one pulse-pounding ride! [1]: https://geomet…

Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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