Bioconductor Tx2gene

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624

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tx2gene tximport Arabidopsis_thaliana kallisto

updated 10 months ago by James W. MacDonald 63k • written 10 months ago by Mikhail Biryukov ▴ 10

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818

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tximport tx2gene rnas DESeq2 RNASeqData

17 months ago Maka • 0

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2.0k

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tx2gene txi error

updated 4.4 years ago by James W. MacDonald 63k • written 4.4 years ago by eliztran • 0

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2.0k

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tximport ensembldb bos taurus tx2gene

updated 5.2 years ago by James W. MacDonald 63k • written 5.2 years ago by gilles.charpigny • 0

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9.4k

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Michael Love Salmon tximport tx2gene

updated 5.6 years ago by Michael Love 40k • written 5.6 years ago by pvd2107 ▴ 30

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Comment: Problems with FLOWAI by SHASHI • 0

please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k

Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…

Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k

Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …

Votes

A: LIMMA dupcor() function time issue.

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

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