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Sample quality weights for RNA-seq
DESeq2
limma
weight
4.8 years ago
Naomi Altman
★ 6.0k
8
votes
6
replies
1.8k
views
Limma weights, non-specific interactions
limma
nonspecific filtering
weight
updated 7.5 years ago by
Gordon Smyth
53k • written 7.5 years ago by
andrew.birnberg
▴ 20
0
votes
1
reply
2.6k
views
Observation/case weighting in cluster analysis in R
hclust
hierarchical clustering
clustering
weight
updated 8.5 years ago by
Aaron Lun
★ 29k • written 8.5 years ago by
danielle.newby
• 0
0
votes
3
replies
1.7k
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Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma
lmfit
weight
individual
8.9 years ago
stephane.cauchi
▴ 10
4 results • Page
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Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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