Showing : weight • reset
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Sample quality weights for RNA-seq
DESeq2 limma weight
4.0 years ago Naomi Altman ★ 6.0k
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Limma weights, non-specific interactions
limma nonspecific filtering weight
updated 6.7 years ago by 52k • written 6.7 years ago by ▴ 20
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Observation/case weighting in cluster analysis in R
hclust hierarchical clustering clustering weight
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
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Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
8.1 years ago stephane.cauchi ▴ 10
4 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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