Showing : lmfit • reset
2
votes
2
replies
124
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lmFit, continuous exposure, adjustment covariates
lmFit
5 weeks ago AyHi • 0
0
votes
0
replies
64
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
9 weeks ago kyleyxw • 0
3
votes
4
replies
205
views
lmFit, number of proteins
lmFit
12 weeks ago • updated 5 weeks ago AyHi • 0
1
vote
5
replies
232
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 15 months ago by 43k • written 15 months ago by • 0
4
votes
6
replies
138
views
mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 16 months ago by 57k • written 16 months ago by • 0
2
votes
2
replies
287
views
design matrix and correlate variable
limma lmfit
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ▴ 10
2
votes
2
replies
428
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 10
0
votes
8
replies
570
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 3.0 years ago by ★ 27k • written 3.0 years ago by • 0
1
vote
7
replies
643
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
3.5 years ago • updated 3.4 years ago darthratus • 0
2
votes
3
replies
767
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
3.9 years ago stinehedensted • 0
2
votes
5
replies
1.2k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 10
0
votes
3
replies
676
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
4.4 years ago stephane.cauchi ▴ 10
0
votes
2
replies
709
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 10
4
votes
8
replies
964
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 4.7 years ago by 7.6k • written 4.7 years ago by • 0
2
votes
4
replies
847
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
2
votes
5
replies
2.5k
views
Analysis using a linear model
lmfit
updated 5.7 years ago by 43k • written 5.7 years ago by • 0
3
votes
6
replies
1.3k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 6.0 years ago by 57k • written 6.0 years ago by ▴ 10
2
votes
2
replies
1.6k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 6.2 years ago by ★ 27k • written 6.2 years ago by ▴ 10
2
votes
8
replies
1.3k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 6.6 years ago by 43k • written 10.3 years ago by ▴ 210
4
votes
3
replies
3.2k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 6.6 years ago by 43k • written 7.2 years ago by ▴ 40
20 results • Page 1 of 1
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Comment: Problems with installation of 'phyloseq by shepherl 2.8k
GenomeInfoDbData is a Bioconductor package. Please use Bioconductor installation `BiocManager::install("GenomeInfoDbData")` and report an…
Comment: Permission denied when manually installing R packages(Rhdf5lib) by Mike Smith ★ 5.0k
Did you resolve this, as you seem to have gotten further in https://support.bioconductor.org/p/9138736/ ?
Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Mike Smith ★ 5.0k
On my Ubuntu system the `iostreams.h` header is provided by the package `libstdc++9-dev`. However that package is a dependency of `g++9` a…
Comment: Compilation fatal error: iostream.h: No such file or directory when installing R by Mike Smith ★ 5.0k
No you don't need to install HDF5 via Ubuntu. The Rhdf5lib package is essentially doing this, and is designed to provide a consistent vers…
Comment: derfinder model.matrix with limma or single base-level F-statistics analysis by Konstantinos Yeles ▴ 60
Dear Leonardo, in the section ***"6.1.2 Find DERs with limma"*** of the derfinder vignette it is explained how to perform an analysis in t…
Votes
Answer: derfinder model.matrix with limma or single base-level F-statistics analysis
A: DESeq2: multiple conditions design -- How to select subset comparisons from the
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
A: Normalized counts of DESeq2 affected by design formula?
A: Finding orthologous human/mouse ENSEMBL IDs
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