Showing : lmfit • reset
1
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1
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404
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Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 8 months ago by ★ 2.1k • written 8 months ago by • 0
2
votes
3
replies
635
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 8 months ago by 47k • written 19 months ago by • 0
0
votes
0
replies
404
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
20 months ago kyleyxw • 0
3
votes
4
replies
638
views
lmFit, number of proteins
lmFit
21 months ago • updated 19 months ago AyHi • 0
1
vote
5
replies
712
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 2.8 years ago by 47k • written 2.8 years ago by • 0
4
votes
6
replies
357
views
mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 2.9 years ago by 62k • written 2.9 years ago by • 0
2
votes
2
replies
516
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design matrix and correlate variable
limma lmfit
updated 3.8 years ago by ★ 28k • written 3.8 years ago by ▴ 10
2
votes
2
replies
716
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 4.1 years ago by 47k • written 4.1 years ago by ▴ 10
0
votes
8
replies
956
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 4.6 years ago by ★ 28k • written 4.6 years ago by • 0
1
vote
7
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1.0k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
5.0 years ago darthratus • 0
2
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3
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1.1k
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
5.4 years ago stinehedensted • 0
2
votes
5
replies
1.8k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 5.4 years ago by 47k • written 5.5 years ago by ▴ 10
0
votes
3
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884
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Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
5.9 years ago stephane.cauchi ▴ 10
0
votes
2
replies
940
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 6.2 years ago by 47k • written 6.2 years ago by ▴ 10
4
votes
8
replies
1.4k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 6.2 years ago by 7.8k • written 6.2 years ago by • 0
2
votes
4
replies
1.1k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 6.6 years ago by 47k • written 6.6 years ago by • 0
2
votes
5
replies
3.2k
views
Analysis using a linear model
lmfit
updated 7.2 years ago by 47k • written 7.2 years ago by • 0
3
votes
6
replies
1.8k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 7.5 years ago by 62k • written 7.5 years ago by ▴ 10
2
votes
2
replies
1.9k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 10
2
votes
8
replies
1.7k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 8.1 years ago by 47k • written 11.8 years ago by ▴ 210
4
votes
3
replies
4.0k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 8.1 years ago by 47k • written 8.7 years ago by ▴ 40
21 results • Page 1 of 1
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Replies
Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user) by lalanis1 • 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma by Gordon Smyth 47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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