Showing : lmfit • reset
2
votes
2
replies
238
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lmFit, continuous exposure, adjustment covariates
lmFit
7 months ago AyHi • 0
0
votes
0
replies
154
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Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
8 months ago kyleyxw • 0
3
votes
4
replies
332
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lmFit, number of proteins
lmFit
8 months ago • updated 7 months ago AyHi • 0
1
vote
5
replies
359
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 21 months ago by 44k • written 21 months ago by • 0
4
votes
6
replies
202
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mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 22 months ago by 58k • written 22 months ago by • 0
2
votes
2
replies
359
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design matrix and correlate variable
limma lmfit
updated 2.7 years ago by ★ 27k • written 2.7 years ago by ▴ 10
2
votes
2
replies
538
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 3.1 years ago by 44k • written 3.1 years ago by ▴ 10
0
votes
8
replies
697
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 3.5 years ago by ★ 27k • written 3.5 years ago by • 0
1
vote
7
replies
776
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
3.9 years ago darthratus • 0
2
votes
3
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854
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Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
4.3 years ago stinehedensted • 0
2
votes
5
replies
1.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 4.4 years ago by 44k • written 4.4 years ago by ▴ 10
0
votes
3
replies
755
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Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
4.9 years ago stephane.cauchi ▴ 10
0
votes
2
replies
783
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 5.2 years ago by 44k • written 5.2 years ago by ▴ 10
4
votes
8
replies
1.1k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 5.2 years ago by 7.7k • written 5.2 years ago by • 0
2
votes
4
replies
920
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Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 5.5 years ago by 44k • written 5.5 years ago by • 0
2
votes
5
replies
2.7k
views
Analysis using a linear model
lmfit
updated 6.2 years ago by 44k • written 6.2 years ago by • 0
3
votes
6
replies
1.5k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 6.5 years ago by 58k • written 6.5 years ago by ▴ 10
2
votes
2
replies
1.7k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 6.6 years ago by ★ 27k • written 6.6 years ago by ▴ 10
2
votes
8
replies
1.5k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 7.1 years ago by 44k • written 10.8 years ago by ▴ 210
4
votes
3
replies
3.5k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 7.1 years ago by 44k • written 7.7 years ago by ▴ 40
20 results • Page 1 of 1
Recent ...
Replies
Comment: How to use subjunc for differential splicing analysis? by Assa Yeroslaviz ★ 1.5k
I assume, that it would make more sense to quantify the reads based on the gene-level and not the exon-level, following by using the `diffS…
Comment: Reading large file (15GB) in R by nabiyogesh • 0
Thanks Sean, I am getting below error with fread, I am running this on HPC with 500GB. > library(data.table) data.table 1.14.2 u…
Comment: Weird output of DESeq2 when using single sample from one group agains the other by Michael Love 35k
This is why you lose power, yes. Power related to sample size. You are also losing information about within-group variance from one group.…
Comment: Weird output of DESeq2 when using single sample from one group agains the other by FantasticAI • 0
Hi Michael, Thank you for your reply. When you say the degrees of freedom reduces from 10 to 5, is this part of the reason that cause the …
Comment: MotifDb missing some FlyFactor Motifs by gunjan.dikshit • 0
Sure, I could give it a try. Can you guide me regarding it.
Votes
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
Answer: Joint disperstion estimation for DEXSeq and DESeq2
Answer: Problems to find the pvalues via rowttests
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
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