Showing : lmfit • reset
2
votes
4
replies
703
views
how limma work with continous variables
GordonSmyth limmaGUI lmFit voom
updated 4 months ago by 52k • written 4 months ago by ▴ 40
1
vote
1
reply
1.2k
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 2.6 years ago by ★ 4.6k • written 2.6 years ago by • 0
2
votes
3
replies
1.6k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 2.6 years ago by 52k • written 3.5 years ago by • 0
0
votes
0
replies
940
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.5 years ago kyleyxw • 0
3
votes
4
replies
1.3k
views
lmFit, number of proteins
lmFit
3.6 years ago • updated 3.5 years ago AyHi • 0
1
vote
5
replies
1.9k
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 4.7 years ago by 52k • written 4.7 years ago by • 0
4
votes
6
replies
928
views
mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
2
votes
2
replies
1.1k
views
design matrix and correlate variable
limma lmfit
updated 5.6 years ago by ★ 28k • written 5.6 years ago by ▴ 10
2
votes
2
replies
1.3k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 6.0 years ago by 52k • written 6.0 years ago by ▴ 10
1
vote
8
replies
2.0k
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
1
vote
7
replies
1.9k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
6.8 years ago darthratus • 0
2
votes
3
replies
2.0k
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
7.2 years ago stinehedensted • 0
2
votes
5
replies
2.7k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 7.3 years ago by 52k • written 7.3 years ago by ▴ 10
0
votes
3
replies
1.4k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
7.8 years ago stephane.cauchi ▴ 10
0
votes
2
replies
1.5k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 8.1 years ago by 52k • written 8.1 years ago by ▴ 10
4
votes
8
replies
2.1k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 8.1 years ago by ★ 7.9k • written 8.1 years ago by • 0
2
votes
4
replies
1.8k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 8.4 years ago by 52k • written 8.4 years ago by • 0
2
votes
5
replies
4.9k
views
Analysis using a linear model
lmfit
updated 9.1 years ago by 52k • written 9.1 years ago by • 0
3
votes
6
replies
2.7k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 9.4 years ago by 67k • written 9.4 years ago by ▴ 10
2
votes
2
replies
2.6k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ▴ 10
2
votes
8
replies
2.5k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 10.0 years ago by 52k • written 13.7 years ago by ▴ 210
4
votes
3
replies
5.1k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 10.0 years ago by 52k • written 10.5 years ago by ▴ 40
22 results • Page 1 of 1
Recent ...
Replies
Comment: p value is 0, padj is 0 by Wirayatida • 0
Than you so much. My counts are 47,37 and 72 for mock. The treatment is 8153, 6723 and 8024.
Comment: p value is 0, padj is 0 by Wirayatida • 0
Thank you so much for your information. I understand it.
Comment: Help using rtracklayer for gene ID extraction by Aichatou • 0
Thank you very much for the quick response. However, I am unable to reproduce the code you provided. It starts to run, then I get the error…
Answer: Deseq2 Design by James W. MacDonald 67k
Trying to use a conventional factor analysis, particularly if you are new, is not the way to go (I have been doing this for over 20 years n…
Answer: p value is 0, padj is 0 by swbarnes2 ★ 1.4k
I think the default smallest value R will return is 1x10^-300. So I'd take a look at the counts, and see if it makes sense that the p-valu…
Votes
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Awards • All
Popular Question to giulia.gentile ▴ 10
Popular Question to mat149 ▴ 80
Popular Question to Yang Shi ▴ 10
Popular Question to shepherl 4.1k
Popular Question to georgii.vdovin • 0
Locations • All
United States, 2 minutes ago
The city by the bay, 9 minutes ago
WEHI, Melbourne, Australia, 31 minutes ago
Japan, 34 minutes ago
United States, 1 hour ago
Traffic: 555 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6