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Biostrings dependency cause new warnings on CRAN packages (base function rgb not found)
Biostrings
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 30
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Comment: C: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
6.3 years ago james.dalgleish ▴ 30
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Answer: A: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
6.3 years ago james.dalgleish ▴ 30
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GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
6.3 years ago james.dalgleish ▴ 30
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Comment: C: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
6.3 years ago james.dalgleish ▴ 30
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Comment: C: GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
6.3 years ago james.dalgleish ▴ 30
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Comment: C: "Packages required but not available." rtracklayer in OSX is not available to CR
6.5 years ago james.dalgleish ▴ 30
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"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 6.5 years ago by ★ 13k • written 6.5 years ago by ▴ 30
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4
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Old jmosaics working package
jmosaics
7.8 years ago james.dalgleish ▴ 30
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Comment: A: Old jmosaics working package
7.8 years ago james.dalgleish ▴ 30
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Answer: A: Using massifquant for peak detection of generic matrix data?
7.8 years ago james.dalgleish ▴ 30
2
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4
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1.9k
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Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
7.9 years ago • updated 7.8 years ago james.dalgleish ▴ 30
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Comment: C: Using massifquant for peak detection of generic matrix data?
7.9 years ago james.dalgleish ▴ 30
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Comment: C: two factor chip with diffbind and edgeR (or DESeq2).
7.9 years ago james.dalgleish ▴ 30
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1.9k
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Comment: C: two factor chip with diffbind and edgeR (or DESeq2).
8.0 years ago james.dalgleish ▴ 30
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6
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1.9k
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two factor chip with diffbind and edgeR (or DESeq2).
diffbind edger
updated 8.0 years ago by ★ 29k • written 8.0 years ago by ▴ 30
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Comment: C: Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad
8.0 years ago james.dalgleish ▴ 30
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Comment: C: Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad
8.0 years ago james.dalgleish ▴ 30
1
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4
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2.2k
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Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad Request"
genomicfeatures
updated 8.0 years ago by ★ 11k • written 8.0 years ago by ▴ 30
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seqlevels(param) not in BAM header
jmosaics
8.0 years ago james.dalgleish ▴ 30
2
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4
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2.9k
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possible Rtracklayer issue: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params from UCSC (issue began last night)
genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart rtracklayer
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 30
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Answer: A: TxDb errors in GenomicFeatures package-- cannot load TxDb with standard params f
8.1 years ago james.dalgleish ▴ 30
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