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CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 3.2 years ago by ▴ 40 • written 5.5 years ago by ▴ 10
1
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2
replies
1.2k
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Using multiple covariates in DIffBind
DiffBind Deseq2
updated 5.0 years ago by ★ 5.2k • written 5.6 years ago by ▴ 10
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8
replies
2.1k
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Diffbind multiple blocking factor
diffbind rory stark chip seq
updated 5.0 years ago by ★ 5.2k • written 5.5 years ago by ▴ 10
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vote
3
replies
3.9k
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 5.0 years ago by ★ 5.2k • written 7.7 years ago by ▴ 10
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0
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1.1k
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How to get the raw numbers of annotated features by ChIPseeker?
ChIPseeker
5.1 years ago bioinfouser2 ▴ 10
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2
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2.1k
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Comment: C: Diffbind multiple blocking factor
5.3 years ago bioinfouser2 ▴ 10
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1
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2.1k
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Comment: C: Diffbind multiple blocking factor
5.4 years ago bioinfouser2 ▴ 10
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0
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2.1k
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Comment: C: Diffbind multiple blocking factor
5.4 years ago bioinfouser2 ▴ 10
0
votes
1
reply
865
views
Which internal tool does DiffBind uses to count BAM reads to calculate sizeFactor?
DiffBind ChIP-seq
updated 5.4 years ago by ★ 5.2k • written 5.5 years ago by ▴ 10
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3.4k
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Answer: A: Extracting raw read counts in DiffBind consensus peak set
5.4 years ago bioinfouser2 ▴ 10
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1
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1.7k
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Comment: C: how to get the estimated libSize in DiffBind
5.4 years ago bioinfouser2 ▴ 10
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0
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2.8k
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Comment: C: CHIPQC error regarding BiocParallel
5.5 years ago bioinfouser2 ▴ 10
0
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1
reply
1.2k
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DiffBind MA plot annotate promoter regions with different colour
diffbind chipseq rorystark
updated 5.7 years ago by ★ 5.2k • written 5.7 years ago by ▴ 10
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0
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4.1k
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Comment: C: lncRNA annotation for featureCouns and STAR
6.5 years ago bioinfouser2 ▴ 10
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1
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4.7k
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Comment: C: How to get all possible comparisons in DiffBind
6.8 years ago bioinfouser2 ▴ 10
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0
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1.5k
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How to use ChIPseeker for getting genebody annotations.
chipseeker chipseq
6.9 years ago bioinfouser2 ▴ 10
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0
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2.1k
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Comment: C: How to do functional enrichment analysis for only promoter regions using ChIPsee
7.1 years ago bioinfouser2 ▴ 10
1
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3
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2.1k
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How to do functional enrichment analysis for only promoter regions using ChIPseeker
chipseeker chipseq
updated 7.1 years ago by ★ 1.2k • written 7.2 years ago by ▴ 10
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0
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2.1k
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Comment: C: How to do functional enrichment analysis for only promoter regions using ChIPsee
7.2 years ago bioinfouser2 ▴ 10
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