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0
votes
3
replies
3.4k
views
problem updating packages importing the package "MASS"
multtest multtest
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 830
0
votes
0
replies
963
views
problem with biocLite("Biobase") -- results in looping of download
Biobase Biobase
15.0 years ago Mark W Kimpel ▴ 830
0
votes
3
replies
2.0k
views
cannot access annotation from ExpressionSet in Bioc-Devel
Annotation GO Biobase limma Annotation GO Biobase limma
updated 15.2 years ago by ▴ 810 • written 15.2 years ago by ▴ 830
0
votes
0
replies
776
views
question on GSEAlm
GSEAlm GSEAlm
15.3 years ago Mark W Kimpel ▴ 830
0
votes
2
replies
1.4k
views
confused about J-G statistic of GSEAlm
GO GSEAlm GO GSEAlm
updated 15.5 years ago by ★ 5.5k • written 15.5 years ago by ▴ 830
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 15.5 years ago by ▴ 90 • written 15.5 years ago by ▴ 830
0
votes
1
reply
1.8k
views
problem with AnnotationDbi
ChipName db0 affy Category AnnotationDbi ChipName db0 affy Category AnnotationDbi
updated 15.6 years ago by 16k • written 15.6 years ago by ▴ 830
0
votes
5
replies
1.5k
views
problem with Category package and custom annotationDbi
Annotation Category AnnotationDbi Annotation Category AnnotationDbi
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 830
0
votes
5
replies
1.6k
views
newbie problems with AnnBuilder
Annotation Organism cdf probe affy AnnBuilder Annotation Organism cdf probe affy
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 830
0
votes
3
replies
1.4k
views
help with using Category package with makecdfenv built Gene ST package
GO cdf affy limma Category GO cdf affy limma Category
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 830
0
votes
2
replies
786
views
can can affyQAReport (package affyQCReport) be adapted for use with Affy Gene ST arrays that are not incorporated into an affyBatch?
cdf convert cdf convert
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 830
0
votes
1
reply
652
views
help with using pdInfoBuilder and oligo for Affy Gene Set arrays
affy oligo affy oligo
updated 15.6 years ago by 65k • written 15.6 years ago by ▴ 830
0
votes
1
reply
994
views
error while using oligo to build a custom affy cdf
BiocViews cdf affy biocViews BiocViews BiocViews cdf affy biocViews
updated 15.6 years ago by 65k • written 15.6 years ago by ▴ 830
0
votes
5
replies
1.4k
views
errors with attempted installation of package affxparser
GO affxparser GO affxparser
updated 15.7 years ago by ★ 6.5k • written 15.7 years ago by ▴ 830
0
votes
2
replies
736
views
affymetrix rat gene ST 1.0 cdf
cdf affy cdf affy
updated 15.8 years ago by 65k • written 15.8 years ago by ▴ 830
0
votes
0
replies
1.2k
views
GSEA packages that depend on GSEABase?
GO GSEABase GO GSEABase
15.8 years ago Mark W Kimpel ▴ 830
0
votes
1
reply
537
views
?function to find minimum p value in matrix of probesets with duplicate gene ids
updated 15.8 years ago by 65k • written 15.8 years ago by ▴ 830
0
votes
2
replies
883
views
question on affyQCReport vignette
affyQCReport affyQCReport
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 830
0
votes
4
replies
1.4k
views
observations on affyprobeminer
GO rat2302 cdf affy qvalue GO rat2302 cdf affy qvalue
updated 16.0 years ago by ▴ 10 • written 16.0 years ago by ▴ 830
0
votes
0
replies
306
views
plot multiple genes over time
16.1 years ago Mark W Kimpel ▴ 830
0
votes
2
replies
366
views
plot multiple genes over time
updated 16.1 years ago by ★ 1.7k • written 16.1 years ago by ▴ 830
0
votes
6
replies
2.3k
views
problem with GOHyperGParams in package Category
Annotation GO GOstats Category Annotation GO GOstats Category
updated 16.2 years ago by ▴ 570 • written 16.2 years ago by ▴ 830
0
votes
1
reply
1.0k
views
need help with mixed effects model
16.2 years ago Mark W Kimpel ▴ 830
0
votes
2
replies
1.1k
views
fontsize in Rgraphviz
GO graph Rgraphviz GO graph Rgraphviz
updated 16.3 years ago by ▴ 540 • written 16.3 years ago by ▴ 830
0
votes
10
replies
2.4k
views
fontsize in Rgraphviz
Rgraphviz Rgraphviz
updated 16.3 years ago by ▴ 220 • written 16.3 years ago by ▴ 830
0
votes
3
replies
1.1k
views
Odd isolated problem with GOstats
GO limma GOstats GO limma GOstats
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 830
0
votes
5
replies
792
views
Affy normalization question
updated 16.4 years ago by 65k • written 16.4 years ago by ▴ 830
0
votes
0
replies
633
views
2x2 factorial in Limma
GO limma GO limma
16.8 years ago Mark W Kimpel ▴ 830
0
votes
1
reply
753
views
over-representation of specific transcription factors in gene lists
Transcription Annotation GO Transcription Annotation GO
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 830
0
votes
0
replies
989
views
passing "main" argument to function plotPCA of affycoretools
16.8 years ago Mark W Kimpel ▴ 830
0
votes
24
replies
3.0k
views
Error in QAReport function of package affyQCReport
affy affy
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 830
0
votes
1
reply
950
views
question regarding ncbi gene2accession and annbuilder
Annotation AnnBuilder biomaRt Annotation AnnBuilder biomaRt
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ▴ 830
0
votes
3
replies
899
views
help with rendering layers in Rgraphviz
graph Rgraphviz graph Rgraphviz
updated 16.9 years ago by ★ 6.5k • written 16.9 years ago by ▴ 830
0
votes
2
replies
2.9k
views
Filtering by variance, IQR, etc.
updated 17.1 years ago by ★ 2.2k • written 17.1 years ago by ▴ 830
0
votes
0
replies
735
views
GSEA for meta-analysis
PROcess PROcess
17.2 years ago Mark W Kimpel ▴ 830
0
votes
0
replies
702
views
GSEA with one class metaanalysis
PROcess PROcess
17.2 years ago Mark W Kimpel ▴ 830
0
votes
3
replies
1.6k
views
can I use FDR correction with hyperGTest conditional GO method?
GO GO
updated 17.3 years ago by ▴ 140 • written 17.3 years ago by ▴ 830
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.3 years ago Mark W Kimpel ▴ 830
0
votes
1
reply
784
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
affycoretools affycoretools
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 830
0
votes
4
replies
1.4k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ▴ 830
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