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8
votes
20
replies
4.6k
views
Using DiffBind blacklists and greylists with results mapped to BDGP6
DiffBind
updated 2.3 years ago by ★ 5.2k • written 3.4 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: Learning DiffBind - some basic questions
3.4 years ago Sam ▴ 10
5
votes
10
replies
1.8k
views
Learning DiffBind - some basic questions
DiffBind
updated 3.1 years ago by ★ 5.2k • written 3.4 years ago by ▴ 10
2
votes
1
reply
922
views
Bewildering PCA plot at DiffBind
DiffBind
updated 3.4 years ago by ★ 5.2k • written 3.4 years ago by ▴ 10
0
votes
0
replies
742
views
Genes in ChIPseeker annotation do not exist in the organism
ChIPseeker
3.4 years ago Sam ▴ 10
11
votes
18
replies
4.9k
views
What is the correct use of removeBatchEffect's design parameter
deseq2 limma
updated 3.1 years ago by 50k • written 3.7 years ago by ▴ 10
0
votes
1
reply
4.9k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.5 years ago Sam ▴ 10
0
votes
1
reply
4.9k
views
Comment: C: What is the correct use of removeBatchEffect's design parameter
3.6 years ago Sam ▴ 10
0
votes
1
reply
4.9k
views
Comment: C: What is the correct use of removeBatchEffect's design parameter
3.7 years ago Sam ▴ 10
0
votes
0
replies
5.9k
views
Comment: C: How to use removeBatchEffect for removing effect of multiple confounding variabl
3.7 years ago Sam ▴ 10
0
votes
1
reply
4.9k
views
Comment: C: What is the correct use of removeBatchEffect's design parameter
3.7 years ago Sam ▴ 10
0
votes
1
reply
4.9k
views
Comment: C: What is the correct use of removeBatchEffect's design parameter
3.7 years ago Sam ▴ 10
0
votes
1
reply
1.0k
views
Comment: C: How to compare a single RNA-Seq sample with microarray samples?
3.9 years ago Sam ▴ 10
0
votes
0
replies
1.0k
views
Comment: C: How to compare a single RNA-Seq sample with microarray samples?
3.9 years ago Sam ▴ 10
1
vote
4
replies
1.0k
views
How to compare a single RNA-Seq sample with microarray samples?
voom rna-seq microarray
updated 3.9 years ago by 65k • written 3.9 years ago by ▴ 10
0
votes
1
reply
17k
views
Comment: C: standard error value (lfcSE) returned by DeSeq2
4.2 years ago Sam ▴ 10
0
votes
1
reply
771
views
Should the design matrix for removeBatchEffect include an intercept?
removeBatchEffect limma
updated 4.2 years ago by 50k • written 4.2 years ago by ▴ 10
0
votes
1
reply
44k
views
Comment: C: Batch correction in DESeq2
4.2 years ago Sam ▴ 10
0
votes
1
reply
44k
views
Comment: C: Batch correction in DESeq2
4.2 years ago Sam ▴ 10
0
votes
0
replies
8.6k
views
Comment: C: removeBatchEffect options: design and covariates
4.2 years ago Sam ▴ 10
1
vote
2
replies
656
views
Why does dispersion estimation in DESeq2 depend on the design formula?
deseq2
updated 4.5 years ago by 42k • written 4.5 years ago by ▴ 10
2
votes
2
replies
1.3k
views
Modelling a multiplicative batch effect with DESeq2
deseq2 batch-effects ComBat
updated 4.6 years ago by 42k • written 4.6 years ago by ▴ 10
2
votes
2
replies
1.0k
views
What to do when a bug is found in a BioConductor package (Glimma)
glimma software error
updated 4.7 years ago by 50k • written 4.7 years ago by ▴ 10
0
votes
0
replies
812
views
The correct specification of the model matrix to ComBat
ComBat sva
4.7 years ago Sam ▴ 10
0
votes
1
reply
8.6k
views
Comment: C: Can NanoString data be analyzed using DESeq2?
4.8 years ago Sam ▴ 10
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