Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
removeBatchEffect
•
reset
0
votes
2
replies
897
views
Remove batch effect between microarray data
Microarray
DifferentialExpression
limma
MicroarrayData
removebatcheffect
15 months ago
dqt
• 0
0
votes
5
replies
3.5k
views
How to remove batch effect from RNA-seq without count data?
RUVSeq
FPKM
removeBatchEffect
RNA-seq
sva
updated 2.3 years ago by
ATpoint
★ 4.0k • written 3.1 years ago by
Xiaojie Cheng
• 0
0
votes
1
reply
760
views
Should the design matrix for removeBatchEffect include an intercept?
removeBatchEffect
limma
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
Sam
▴ 10
5
votes
7
replies
2.6k
views
logCPM to CPM conversion after removeBatchEffect()
edger
removeBatchEffect
cpm
logCPM
limma
4.9 years ago
altintas.ali
• 0
1
vote
6
replies
1.6k
views
edgeR removing batch effect before using expression data for clustering
edger
r
batcheffect
clustering
removeBatchEffect
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
Biologist
▴ 110
2
votes
5
replies
4.2k
views
Batch Effect Correction
batch effect
removebatcheffect
edgeR
rld
DEseq2
5.7 years ago
Antonio Ahn
▴ 10
1
vote
1
reply
1.5k
views
Batch effect removal before SC3?
SC3
batch effect
removebatcheffect
updated 6.4 years ago by
Vladimir Kiselev
▴ 150 • written 6.4 years ago by
muad.abdelhay
▴ 10
11
votes
8
replies
10k
views
Limma and batch effect
limma
differential gene expression
clustering
removebatcheffect
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
lirongrossmann
▴ 80
9
votes
8
replies
8.5k
views
removeBatchEffect options: design and covariates
limma
removebatcheffect
updated 6.6 years ago by
Gordon Smyth
50k • written 9.7 years ago by
Rao,Xiayu
▴ 550
0
votes
1
reply
2.3k
views
Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactly singular: U[4,4] = 0
sva
R
removebatcheffect
6.9 years ago
aina.jene
▴ 10
2
votes
2
replies
2.0k
views
SVA package - ERROR: nvobj = sva(edata, mod, mod0, n.sv=n.sv)
sva
removebatcheffect
R
updated 6.9 years ago by
sina.nassiri
▴ 130 • written 7.0 years ago by
aina.jene
▴ 10
1
vote
3
replies
1.3k
views
Re-use limma beta coefficients
limma
removebatcheffect
7.4 years ago
Keifa
▴ 10
3
votes
6
replies
2.2k
views
is it necessary to check batch effect in this case? and how to?
svaseq
combat sva
RANseq
batcheffect
removebatcheffect
updated 7.5 years ago by
Jakub
▴ 50 • written 7.5 years ago by
amoltej
▴ 10
0
votes
3
replies
1.4k
views
How to remove nested batch effects with removeBatchEffect?
edgeR
removeBatchEffect
nested design
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
Jenny Drnevich
★ 2.0k
17
votes
7
replies
5.8k
views
How to use removeBatchEffect for removing effect of multiple confounding variables
limma
removebatcheffect
deseq2
updated 7.9 years ago by
Ryan C. Thompson
★ 7.9k • written 7.9 years ago by
ompandey
▴ 10
4
votes
5
replies
2.6k
views
Removing unwanted variation (RUV) for paired analysis ?
ruvseq
edger
ruvg
removebatcheffect
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
g.atla
▴ 10
9
votes
10
replies
13k
views
Is the following a correct usage of Limma's removeBatchEffect() for clustered heat map generation?
limma
removeBatchEffect
heatmap
clustering
updated 8.3 years ago by
Bernd Klaus
▴ 610 • written 8.3 years ago by
Ekarl2
▴ 80
17 results • Page
1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Awards
• All
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Locations
• All
Germany,
just now
EMBL Heidelberg,
5 minutes ago
WEHI, Melbourne, Australia,
6 minutes ago
Mexico,
13 minutes ago
China,
15 minutes ago
Traffic: 565 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6