Biostar RemoveBatchEffect

Showing : removeBatchEffect • reset

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250

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RUVSeq FPKM removeBatchEffect RNA-seq sva

4 months ago Xiaojie Cheng • 0

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121

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removeBatchEffect limma

updated 17 months ago by Gordon Smyth 43k • written 17 months ago by Sam ▴ 10

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703

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edger removeBatchEffect cpm logCPM limma

2.2 years ago altintas.ali • 0

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517

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edger r batcheffect clustering removeBatchEffect

updated 2.2 years ago by James W. MacDonald 57k • written 2.2 years ago by Biologist ▴ 90

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1.2k

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batch effect removebatcheffect edgeR rld DEseq2

3.0 years ago Antonio Ahn ▴ 10

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726

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SC3 batch effect removebatcheffect

updated 3.6 years ago by Vladimir Kiselev ▴ 150 • written 3.7 years ago by muad.abdelhay ▴ 10

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4.5k

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limma differential gene expression clustering removebatcheffect

updated 3.9 years ago by Gordon Smyth 43k • written 3.9 years ago by lirongrossmann ▴ 60

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5.3k

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limma removebatcheffect

updated 3.9 years ago by Gordon Smyth 43k • written 7.0 years ago by Rao,Xiayu ▴ 540

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1.4k

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sva R removebatcheffect

4.2 years ago aina.jene ▴ 10

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1.1k

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sva removebatcheffect R

updated 4.2 years ago by sina.nassiri ▴ 110 • written 4.2 years ago by aina.jene ▴ 10

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648

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limma removebatcheffect

4.7 years ago Keifa ▴ 10

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996

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 4.8 years ago by Jakub ▴ 30 • written 4.8 years ago by amoltej ▴ 10

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604

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edgeR removeBatchEffect nested design

updated 4.8 years ago by Aaron Lun ★ 27k • written 4.8 years ago by Jenny Drnevich ★ 2.0k

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2.7k

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limma removebatcheffect deseq2

updated 5.2 years ago by Ryan C. Thompson 7.6k • written 5.2 years ago by ompandey • 0

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1.7k

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ruvseq edger ruvg removebatcheffect

updated 5.5 years ago by Aaron Lun ★ 27k • written 5.5 years ago by g.atla ▴ 10

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8.9k

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limma removeBatchEffect heatmap clustering

updated 5.6 years ago by Bernd Klaus ▴ 600 • written 5.6 years ago by Ekarl2 ▴ 70

16 results • Page 1 of 1

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Comment: error message from oligo package by Jesús • 0

Hola chchen. Actualmente estoy trabajando con Oligo y estoy tratando de aplicar MAS de la siguiente forma: backgroundCorrect (data, method…

Answer: Is there anyway to replace seqlevels in a txdb by James W. MacDonald 57k

``` > txdb <- makeTxDbFromBiomart(dataset = "mochrogaster_gene_ensembl") Download and preprocess the 'transcripts' data frame ... OK Dow…

Answer: extract the "start" position of matchPattern() by shepherl 2.8k

Average of start values: ``` > temp = matchPattern("A", "ACGTA", max.mismatch=0) > vls = start(temp) > mean(vls) ``` You will have to loo…

Answer: Paired samples analysis by Michael Love 33k

For questions about how to choose and interpret an appropriate statistical design, I would recommend working with a local statistician or s…

Comment: AlignmentsTrack empty plot by karlaarz • 0

No, it was my mistake while copying the script, but the output is still the same. I've already edited the post by removing the negative sym…

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Comment: Compilation fatal error: iostream.h: No such file or directory when installing R

Answer: tximeta countsFromAbundance for downstream analysis

A: plotPCA - how to add labels to a PCA plot

Answer: Can't produce a generegiontrack from my txdb anymore

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