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Bioconductor Digest, Vol 117, Issue 6
affy affy
11.5 years ago Dick Beyer ★ 1.4k
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7
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1.4k
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getBM weird error
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ★ 1.4k
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1
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908
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lumi and/or beadarray for getting beadSummary
Microarray Annotation EBImage Microarray Annotation EBImage
updated 12.6 years ago by ★ 6.5k • written 12.6 years ago by ★ 1.4k
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669
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Biostats/Bioinformatics job University of Washington
Microarray Microarray
12.9 years ago Dick Beyer ★ 1.4k
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0
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788
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pdmClass plot error
pdmclass pdmclass
12.9 years ago Dick Beyer ★ 1.4k
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1
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1.2k
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Problem with BGandNorm() from the Agi4x44PreProcess package
vsn vsn
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ★ 1.4k
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4
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1.2k
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DEGraph demo exprData question
GO DEGraph GO DEGraph
13.1 years ago Dick Beyer ★ 1.4k
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8
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2.0k
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IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
13.1 years ago Dick Beyer ★ 1.4k
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0
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1.2k
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
13.9 years ago Dick Beyer ★ 1.4k
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1.2k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
14.2 years ago Dick Beyer ★ 1.4k
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2
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1.3k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 14.2 years ago by 21k • written 14.2 years ago by ★ 1.4k
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4
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1.3k
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Bioconductor Digest, Vol 84, Issue 19
Proteomics Proteomics
updated 14.2 years ago by 25k • written 14.2 years ago by ★ 1.4k
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2
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1.8k
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how to get number of samples from GSE with GEOquery
GEOquery GEOquery
updated 14.4 years ago by ▴ 170 • written 14.4 years ago by ★ 1.4k
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700
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gene2pathway: Error in pathIDsLev1
14.4 years ago Dick Beyer ★ 1.4k
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0
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769
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qaGeneST bug
ArrayTools ArrayTools
14.6 years ago Dick Beyer ★ 1.4k
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0
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1.0k
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problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
14.6 years ago Dick Beyer ★ 1.4k
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2
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841
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support for miRNA-1_0?
affy microRNA affy microRNA
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ★ 1.4k
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2
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1.4k
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question about p-values in maSigPro
affy maSigPro affy maSigPro
14.8 years ago Dick Beyer ★ 1.4k
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0
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703
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combining GSA and lmFit
Microarray limma Microarray limma
15.0 years ago Dick Beyer ★ 1.4k
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0
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1.2k
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
15.4 years ago Dick Beyer ★ 1.4k
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9
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1.6k
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xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’
ChipName affy xps ChipName affy xps
updated 16.0 years ago by ★ 3.9k • written 16.0 years ago by ★ 1.4k
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3
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1.4k
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topGO and GOstats conflict
GO GOstats topGO GO GOstats topGO
16.1 years ago Dick Beyer ★ 1.4k
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6
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1.4k
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unable to find known entrezgene with biomaRt
biomaRt biomaRt
updated 16.3 years ago by 65k • written 16.3 years ago by ★ 1.4k
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2
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1.3k
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Venn Diagram for 2, 3 and 4 sets (can be extended for
GO limma GO limma
updated 16.6 years ago by ▴ 70 • written 16.6 years ago by ★ 1.4k
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4
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2.1k
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disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
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2
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1.1k
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biomaRt, Error: ncol(result) == length(attributes) is not TRUE
Biobase annotate Rgraphviz biomaRt Biobase annotate Rgraphviz biomaRt
updated 17.0 years ago by ▴ 580 • written 17.0 years ago by ★ 1.4k
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0
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1.1k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.1 years ago Dick Beyer ★ 1.4k
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6
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1.3k
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exonmap install
affy exonmap affy exonmap
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 1.4k
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4
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1.2k
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metadata for Affymetrix Poplar array
Annotation cdf Annotation cdf
updated 17.2 years ago by ▴ 870 • written 17.2 years ago by ★ 1.4k
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0
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783
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Bioconductor Digest, Vol 45, Issue 9
affy simpleaffy affyio affy simpleaffy affyio
17.5 years ago Dick Beyer ★ 1.4k
0
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0
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1.0k
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simpleaffy gives error: unable to find an inherited method for function "pData"
affy simpleaffy affyio affy simpleaffy affyio
17.5 years ago Dick Beyer ★ 1.4k
0
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0
replies
1.3k
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What to do with multiple probes in GSEA?
probe affy PROcess probe affy PROcess
17.6 years ago Dick Beyer ★ 1.4k
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0
replies
487
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request for gtype_cel_to_pq
affy affy
18.1 years ago Dick Beyer ★ 1.4k
0
votes
2
replies
1.1k
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AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 18.1 years ago by ▴ 780 • written 18.1 years ago by ★ 1.4k
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2
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729
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missing probeids in mu11ksuba metadata
mu11ksuba affy mu11ksuba affy
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ★ 1.4k
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0
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846
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problems with hgu133a2?
hgu133a2 probe affy hgu133a2 probe affy
18.2 years ago Dick Beyer ★ 1.4k
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0
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747
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want to compare hgu133a and hgu133plus2
hgu133a hgu133plus2 affy Resourcerer hgu133a hgu133plus2 affy Resourcerer
18.6 years ago Dick Beyer ★ 1.4k
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2
replies
1.1k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
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0
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854
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
18.8 years ago Dick Beyer ★ 1.4k
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6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
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votes
1
reply
916
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possible problems with call.exprs for mas, mas-R, and justPlier
cdf affy cdf affy
19.1 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
762
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affy SNP chips
SNP SNP
updated 19.1 years ago by 65k • written 19.1 years ago by ★ 1.4k
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0
replies
636
views
What are the justPlier 4 processing steps?
Normalization affy gcrma Normalization affy gcrma
19.1 years ago Dick Beyer ★ 1.4k
0
votes
2
replies
1.1k
views
hgu133plus2SYMBOL missing an entry for 211506_s_at
cdf cdf
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ★ 1.4k
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0
replies
812
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limma paired samples using block
affy affy
19.2 years ago Dick Beyer ★ 1.4k
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votes
4
replies
1.0k
views
GOLOCUSID and GOALLLOCUSID disagree with AmiGO
GO GO
updated 19.3 years ago by ★ 5.5k • written 19.3 years ago by ★ 1.4k
0
votes
0
replies
728
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
moe430a cdf simpleaffy moe430a cdf simpleaffy
19.3 years ago Dick Beyer ★ 1.4k
0
votes
2
replies
961
views
confusion using model.matrix with two-color arrays in limma
updated 19.5 years ago by 50k • written 19.5 years ago by ★ 1.4k
0
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0
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1.0k
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affy v codelink
affy limma codelink affy limma codelink
19.5 years ago Dick Beyer ★ 1.4k
0
votes
2
replies
903
views
Affy PLIER
plier plier
updated 19.5 years ago by ★ 2.3k • written 19.5 years ago by ★ 1.4k
87 results • Page 1 of 2
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