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Showing :
questions
1
vote
0
replies
2.3k
views
TopGO p-values VS DAVID p-values
Microarray
GO
Category
topGO
Microarray
GO
Category
topGO
12.8 years ago
Paul Geeleher
★ 1.3k
0
votes
13
replies
2.1k
views
Loading quantiles normalized root data in XPS
probe
affy
xps
probe
affy
xps
updated 12.8 years ago by
cstrato
★ 3.9k • written 12.8 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
972
views
miRNA target prediction algorithm setting used in RmiR.Hs.miRNA package.
miRNA
RmiR
miRNA
RmiR
13.6 years ago
Paul Geeleher
★ 1.3k
1
vote
2
replies
3.2k
views
exonsBy() function from GenomicFeature, preserve transcript names?
updated 13.9 years ago by
Marc Carlson
★ 7.2k • written 13.9 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.1k
views
BiomaRt down?
biomaRt
biomaRt
updated 13.9 years ago by
Michael Imbeault
▴ 220 • written 13.9 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.1k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation
GO
probe
affy
convert
Annotation
GO
probe
affy
convert
13.9 years ago
Paul Geeleher
★ 1.3k
0
votes
5
replies
1.8k
views
ReadAffy() can't read CEL files from TCGA...
updated 14.2 years ago by
Tim Triche
★ 4.2k • written 14.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
9
replies
1.4k
views
Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
updated 14.2 years ago by
Steve Lianoglou
★ 13k • written 14.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
4
replies
1.3k
views
Error mapping RNA-seq data to genome
GenomicFeatures
GenomicRanges
GenomicFeatures
GenomicRanges
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Paul Geeleher
★ 1.3k
0
votes
13
replies
2.2k
views
Analysing DNA methylation microarrays in Bioconductor
Microarray
Microarray
updated 14.4 years ago by
Claus-Jürgen Scholz
▴ 90 • written 14.4 years ago by
Paul Geeleher
★ 1.3k
0
votes
3
replies
2.2k
views
Error installing Rsamtools
ShortRead
Rsamtools
ShortRead
Rsamtools
updated 14.5 years ago by
Martin Morgan
25k • written 14.5 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.2k
views
P-values to Z-scores
updated 14.7 years ago by
francois@sus.mcgill.ca
▴ 90 • written 14.7 years ago by
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.2k
views
retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt
Ringo
biomaRt
Ringo
updated 14.8 years ago by
Joern Toedling
▴ 450 • written 14.8 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
844
views
Using combineReplicates in computeRunningMedians() function in Ringo
updated 14.8 years ago by
Joern Toedling
▴ 450 • written 14.8 years ago by
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.4k
views
Strange output in GenABEL convert.snp.ped()
SNP
HapMap
SNP
HapMap
updated 14.8 years ago by
Martin Morgan
25k • written 14.8 years ago by
Paul Geeleher
★ 1.3k
0
votes
5
replies
1.4k
views
ggTools Error
GGtools
GGtools
updated 14.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.9 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
814
views
Hapmap miRNA expression data
miRNA
HapMap
ArrayExpress
miRNA
HapMap
ArrayExpress
15.0 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
833
views
Convert u133a probe Ids to exon array Ids
probe
affy
probe
affy
updated 15.0 years ago by
cstrato
★ 3.9k • written 15.0 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
4.1k
views
rowttests() function in genefilter library
GO
GO
updated 15.0 years ago by
rgentleman
★ 5.5k • written 15.0 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.2k
views
ArrayExpress error attaching phenodata
ArrayExpress
ArrayExpress
updated 15.0 years ago by
audrey
▴ 280 • written 15.1 years ago by
Paul Geeleher
★ 1.3k
0
votes
10
replies
2.9k
views
Very low P-values in limma
miRNA
limma
microRNA
miRNA
limma
microRNA
updated 15.1 years ago by
Olga Vitek
▴ 40 • written 15.1 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.3k
views
Array express looking in wrong place for file...
GO
GO
updated 15.1 years ago by
audrey
▴ 280 • written 15.1 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
931
views
Duplicate correlation error in limma
15.3 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
873
views
Map gene expression to location in genome.
Clustering
Clustering
updated 15.4 years ago by
Hervé Pagès
16k • written 15.4 years ago by
Paul Geeleher
★ 1.3k
0
votes
6
replies
1.3k
views
PCA scree plot question
updated 15.5 years ago by
Iain Gallagher
▴ 930 • written 15.5 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.7k
views
Pearson Correlation & log transformed data.
Clustering
Clustering
15.6 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.0k
views
Problems reading single channel GenePix data with read.maimages.
15.7 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.5k
views
GSEA to discover co-regulated genes
Transcription
Annotation
Pathways
Infrastructure
probe
convert
GSEABase
Transcription
15.8 years ago
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.1k
views
Duplicate probesets in mouse4302
mouse4302
mouse4302
updated 15.8 years ago by
Henrik Bengtsson
★ 2.4k • written 15.8 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.1k
views
GSEA to discover co-regulated genes
Transcription
Pathways
Transcription
Pathways
updated 15.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.9 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.0k
views
Visualising SOM output as U-matrix in R\Bioconductor
Clustering
Clustering
16.0 years ago
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.3k
views
Do my Limma results look "normal"?
Microarray
Cancer
Breast
limma
GeneSpring
Microarray
Cancer
Breast
limma
GeneSpring
updated 16.5 years ago by
rgentleman
★ 5.5k • written 16.5 years ago by
Paul Geeleher
★ 1.3k
0
votes
6
replies
1.8k
views
Analyze miRNA experiment in Bioconductor
miRNA
GO
limma
puma
miRNA
GO
limma
puma
updated 16.6 years ago by
Deepayan Sarkar
▴ 220 • written 16.6 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
974
views
Screeplot in puma package
puma
puma
updated 16.6 years ago by
Richard Pearson
▴ 390 • written 16.6 years ago by
Paul Geeleher
★ 1.3k
0
votes
4
replies
1.2k
views
Flipping labels on bottom of boxplot
updated 16.6 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 16.6 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.1k
views
Error when doing RNA deg plot on Estrogen data.
updated 16.6 years ago by
Keith Satterley
▴ 450 • written 16.6 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
954
views
simpleAffy with bovine cdf
cdf
simpleaffy
cdf
simpleaffy
16.6 years ago
Paul Geeleher
★ 1.3k
0
votes
2
replies
756
views
Reference individual array in abatch after changing pData
updated 16.7 years ago by
Martin Morgan
25k • written 16.7 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
924
views
Running Pumacomb on both cores of dual-core machine
puma
puma
16.8 years ago
Paul Geeleher
★ 1.3k
0
votes
10
replies
1.8k
views
Running Pumacomb on both cores of dual-core machine
puma
puma
updated 16.8 years ago by
Richard Pearson
▴ 390 • written 16.8 years ago by
Paul Geeleher
★ 1.3k
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