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Comment: C: DESeq2 vst normalization: Do I have a heteroscedasticity problem and if so, what
5.2 years ago Wolfgang Huber ★ 13k
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Answer: A: stringasfactor = F changes the output of pheatmap, why?
5.2 years ago Wolfgang Huber ★ 13k
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Job: Staff researcher position in Machine Learning - Multimodal data analysis, dimension reduction
factor analysis mofa Job
5.3 years ago Wolfgang Huber ★ 13k
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857
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Answer: A: Array quality metrics for large sample size
5.3 years ago Wolfgang Huber ★ 13k
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1.0k
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Comment: C: Arrayquality metrics Warning - Warning message in maximumLevels(fac, n = length(
5.3 years ago Wolfgang Huber ★ 13k
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757
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Answer: A: Extraction of connected components in an image
5.3 years ago Wolfgang Huber ★ 13k
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1.0k
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Answer: A: EBimage fftw issue
5.3 years ago Wolfgang Huber ★ 13k
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0
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961
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Job: Staff researcher position in biostatistics / data science consulting at EMBL
EMBL Job
5.3 years ago Wolfgang Huber ★ 13k
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0
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872
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Answer: A: DESeq2: plotMA looks wrong
5.4 years ago Wolfgang Huber ★ 13k
2
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1
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7.8k
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Answer: A: DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
5.4 years ago Wolfgang Huber ★ 13k
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1.2k
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Answer: A: Installing lpsymphony on Mac OS X
5.4 years ago Wolfgang Huber ★ 13k
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2.2k
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Comment: C: DEXSeqHTML getListElement GRanges error
5.5 years ago Wolfgang Huber ★ 13k
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1.3k
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Comment: C: IHW multiple testing correction
5.5 years ago Wolfgang Huber ★ 13k
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1
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1.3k
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Answer: A: IHW multiple testing correction
5.5 years ago Wolfgang Huber ★ 13k
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1.3k
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Comment: C: IHW multiple testing correction
5.5 years ago Wolfgang Huber ★ 13k
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1
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1.3k
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Answer: A: Initial List of Deprecated Package Bioc 3.9
5.5 years ago Wolfgang Huber ★ 13k
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1.4k
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News: Ascona Workshop 2019 - Statistical Challenges in Medical Data Science, 16-21 June 2019
workshop News
5.5 years ago Wolfgang Huber ★ 13k
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991
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Answer: A: How to filter overlaping EBImage objects?
5.6 years ago Wolfgang Huber ★ 13k
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0
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3.6k
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Answer: A: DESeq2- Size factors (median of ratios) assumptions - global adjustment normaliz
5.7 years ago Wolfgang Huber ★ 13k
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0
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2.2k
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Answer: A: What are the different strategies to filter out low count genes?
5.8 years ago Wolfgang Huber ★ 13k
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1.3k
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Answer: C: Anomal pvalue distribution and qvalue calculation
5.9 years ago Wolfgang Huber ★ 13k
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0
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967
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Comment: C: Need to read in DEXSeqResults object to R from csv
5.9 years ago Wolfgang Huber ★ 13k
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0
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1.7k
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Comment: C: rlog, lfcShrink and vst on gene subset
5.9 years ago Wolfgang Huber ★ 13k
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1
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1.3k
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Answer: A: Using DESeq2 normalisation method on a tximport list of matrices without sample
6.0 years ago Wolfgang Huber ★ 13k
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1
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1.8k
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Comment: C: Relabelling objects - EBImage
6.0 years ago Wolfgang Huber ★ 13k
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1.6k
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Comment: C: [DESeq2] Different results from tutorial
6.0 years ago Wolfgang Huber ★ 13k
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1
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1.6k
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Answer: A: [DESeq2] Different results from tutorial
6.0 years ago Wolfgang Huber ★ 13k
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4.4k
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Comment: C: Conversion to SingleCellExperiment from Seurat objects
6.0 years ago Wolfgang Huber ★ 13k
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1
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4.4k
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Conversion to SingleCellExperiment from Seurat objects
Seurat SingleCellExperiment
6.0 years ago Wolfgang Huber ★ 13k
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3.0k
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exprs function - clash with dplyr
exprs dplyr Biobase
6.0 years ago Wolfgang Huber ★ 13k
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869
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Comment: C: Stacked density plots not working in for loop (graphical device crashing?)
6.0 years ago Wolfgang Huber ★ 13k
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0
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2.9k
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Answer: A: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
6.0 years ago Wolfgang Huber ★ 13k
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0
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2.7k
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Answer: A: Limma - how to manage huge differences in library sizes
6.0 years ago Wolfgang Huber ★ 13k
1
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1
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963
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Answer: A: How to Remove EBImage objects that have holes?
6.1 years ago Wolfgang Huber ★ 13k
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1.3k
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Answer: A: Is there a data package containing complex RNA-Seq data?
6.2 years ago Wolfgang Huber ★ 13k
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0
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803
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Answer: A: Errors of loading HilbertVisGUI
6.3 years ago Wolfgang Huber ★ 13k
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2.0k
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Comment: C: rlog transformation producing outliers with very high log-transformed counts
6.3 years ago Wolfgang Huber ★ 13k
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1
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11k
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Comment: C: Is there a conceptual difference between vst/rlog transforms and lfcShrink?
6.3 years ago Wolfgang Huber ★ 13k
2
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1
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2.9k
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Answer: A: Protein differential Expression analysis
6.3 years ago Wolfgang Huber ★ 13k
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717
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Answer: A: Multiple tests in a single deseq object
6.4 years ago Wolfgang Huber ★ 13k
1
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0
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1.5k
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Answer: A: an unexplained phenomenon using variance stabilizing transformation for downstre
6.4 years ago Wolfgang Huber ★ 13k
1
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0
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964
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Answer: A: DESeq possible when only rlog table available? (DESeq2 package)
6.4 years ago Wolfgang Huber ★ 13k
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1
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1.1k
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Answer: A: How is the within-subject correlation modeled in time course experiments in DESe
6.4 years ago Wolfgang Huber ★ 13k
1
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1
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3.0k
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Answer: A: Found more than one class
6.5 years ago Wolfgang Huber ★ 13k
1
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1
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1.2k
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Answer: A: Running DESeq2 with gene-dependent binary variable such as membership in pathway
6.5 years ago Wolfgang Huber ★ 13k
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0
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3.0k
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Comment: C: Found more than one class
6.5 years ago Wolfgang Huber ★ 13k
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2
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774
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Comment: C: By pass dispersion estimation in DESeq2
6.5 years ago Wolfgang Huber ★ 13k
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2
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1.7k
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Answer: A: expression matrix with varianceStabilizingTransformation
6.6 years ago Wolfgang Huber ★ 13k
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1
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3.2k
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Comment: C: Problem installing rhdf5
6.6 years ago Wolfgang Huber ★ 13k
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1
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2.8k
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Answer: A: function getAE from ArrayExpress needs update because EBI has switched to https
6.6 years ago Wolfgang Huber ★ 13k
1,428 results • Page 2 of 29
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