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4.5 years ago • updated 4.3 years ago
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5.3 years ago • updated 5.2 years ago
Wolfgang Huber
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5.4 years ago
Mark Dunning
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Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015
6.9 years ago • updated 6.5 years ago
Wolfgang Huber
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6.8 years ago
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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way
by
Ming
▴
350
Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
by
Gordon Smyth
43k
> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels?
NA values are n…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
by
James W. MacDonald
57k
The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…
Comment: error in getBM (biomaRt): "error: no such table: metadata"
by
Mike Smith
★
5.0k
Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
by
svlachavas
▴
780
Dear James,
thank you very much for your comment; please excuse me for my naïve additional question, but is there an example in the edgeR …
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