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News: Introduction to genomic data analysis with R and Bioconductor in Heidelberg, 12-13 September 2022
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6 months ago Laurent Gatto 1.6k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
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updated 18 days ago by • 0 • written 15 months ago by 13k
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News: BioC Asia Virtual Meeting, 1-4 November 2021
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21 months ago shepherl 3.4k
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News: [CDSB] Workshop 2020: Building workflows with RStudio and Bioconductor for single cell RNA-seq analysis
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2.9 years ago Leonardo Collado Torres ★ 1.0k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
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3.9 years ago Laurent Gatto 1.6k
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News: Ascona Workshop 2019 - Statistical Challenges in Medical Data Science, 16-21 June 2019
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4.3 years ago Wolfgang Huber 13k
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
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6.0 years ago • updated 5.9 years ago Laurent Gatto 1.6k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
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6.4 years ago Wolfgang Huber 13k
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News: Workshop: microRNA Analysis Using Next-Generation Sequencing - From microRNA profiling and prediction to extensive downstream analyses
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6.6 years ago adele.feuerstein • 0
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News: Workshop: Clinical Bioinformatics as a Service, at ECCB 2016 - register till 29 May
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6.8 years ago • updated 6.7 years ago Wolfgang Huber 13k
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News: Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
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6.9 years ago Mark Dunning ★ 1.1k
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News: European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
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updated 7.3 years ago by 1.6k • written 7.4 years ago by ★ 1.1k
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News: C1omics: single-cell omics methods and applications, Manchester 24-25 Nov 2015
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7.3 years ago Wolfgang Huber 13k
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News: Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015
Statistical Learning Workshop News
8.4 years ago • updated 8.0 years ago Wolfgang Huber 13k
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News: European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
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8.3 years ago Wolfgang Huber 13k
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News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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8.3 years ago Thomas Girke ★ 1.7k
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News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
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8.3 years ago gagneur ▴ 10
19 results • Page 1 of 1
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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