Showing : dplyr • reset
5
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ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub dplyr
10 months ago • updated 8 weeks ago georgia.katsoula ▴ 10
8
votes
4
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289
views
Tidyverse can be a bit tidiest to work with....
dplyr tidyr
updated 13 months ago by 25k • written 13 months ago by ▴ 30
0
votes
4
replies
753
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 2.7 years ago by 58k • written 2.7 years ago by ▴ 140
0
votes
2
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920
views
Error in print.header("GDCquery: Searching in GDC database", "section") :could not find function "print.header",
tcgabiolinks dplyr DT
3.0 years ago Mithil Gaikwad • 0
8
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2
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1.4k
views
exprs function - clash with dplyr
exprs dplyr Biobase
3.3 years ago Wolfgang Huber 13k
7
votes
4
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3.1k
views
Error UseMethod ("select_"): from bioconductor dplyr select package
bioconductor dplyr select
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 10
3
votes
1
reply
682
views
Parallel Join Excessively Slow
biocparallel curatedmetagenomicdata parallel dplyr
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 220
3
votes
5
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Any quick solution for fixing error : "$ operator is invalid for atomic vectors" ?
r granges dplyr error handling
updated 4.9 years ago by ★ 5.1k • written 4.9 years ago by ▴ 70
3
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0
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Tutorial: dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb dplyr Tutorial
6.3 years ago Sean Davis 21k
9 results • Page 1 of 1
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Answer: Error in makeTxDbFromGFF(txomeInfo$gtf) by Michael Love 34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Gordon Smyth 43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2 by michael.morash • 0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Votes
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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