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Comment: Comment: WGCNA soft thresholding suggesting a power of 1
11 weeks ago boczniak767 ▴ 720
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396
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Comment: Comment: vst transformation and zero counts
12 weeks ago boczniak767 ▴ 720
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396
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Comment: Comment: vst transformation and zero counts
12 weeks ago boczniak767 ▴ 720
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5
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396
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vst transformation and zero counts
DESeq2
updated 12 weeks ago by ★ 4.1k • written 12 weeks ago by ▴ 720
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585
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Comment: Comment: Average biological replicates in RNA-seq
12 weeks ago boczniak767 ▴ 720
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585
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Comment: Comment: Average biological replicates in RNA-seq
12 weeks ago boczniak767 ▴ 720
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585
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Comment: Comment: Average biological replicates in RNA-seq
12 weeks ago boczniak767 ▴ 720
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6
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585
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Average biological replicates in RNA-seq
Mfuzz RNASeq
12 weeks ago boczniak767 ▴ 720
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460
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Comment: Comment: goseq, warning and strange plot from nullp
3 months ago boczniak767 ▴ 720
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460
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Comment: Comment: goseq, warning and strange plot from nullp
3 months ago boczniak767 ▴ 720
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4
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460
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goseq, warning and strange plot from nullp
goseq
3 months ago boczniak767 ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
13 months ago boczniak767 ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
13 months ago boczniak767 ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
0
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486
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Plot profiles for each group - spline analysis in edgeR
timecoursedata edgeR
updated 14 months ago by 50k • written 14 months ago by ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
0
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2
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
0
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1
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
0
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1
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
0
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1
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2.0k
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Comment: Comment: Time-course, comparison of two groups
14 months ago boczniak767 ▴ 720
1
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20
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2.0k
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Time-course, comparison of two groups
edgeR
14 months ago • updated 13 months ago boczniak767 ▴ 720
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1
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330
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Time-course for three-factor design
DESeq2
updated 14 months ago by 42k • written 14 months ago by ▴ 720
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916
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Loading eSet.r objects from ArrayExpress
10.5 years ago boczniak767 ▴ 720
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0
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711
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does contamination bother the normalization in transcriptome analysis
Normalization Normalization
11.0 years ago boczniak767 ▴ 720
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1
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1.9k
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Comment: C: XML package - 500 internal server error
11.0 years ago boczniak767 ▴ 720
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1.9k
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Comment: C: XML package - 500 internal server error
11.0 years ago boczniak767 ▴ 720
0
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5
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1.9k
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XML package - 500 internal server error
GEOquery ArrayExpress GEOquery ArrayExpress
updated 11.0 years ago by 21k • written 11.0 years ago by ▴ 720
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1.3k
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Answer: A: Limma/Affy - Include expression Intensity in Final 'decideTests' results
11.1 years ago boczniak767 ▴ 720
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2
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1.5k
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Answer: A: Fwd: problem with reading gpr files
11.2 years ago boczniak767 ▴ 720
1
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1.2k
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qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.3 years ago boczniak767 ▴ 720
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1
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1.5k
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Answer: A: Query regarding limma
11.3 years ago boczniak767 ▴ 720
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693
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Windows or Excel to R txt file
11.4 years ago boczniak767 ▴ 720
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1
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634
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Answer: A: How to choose the most 2 different samples in an array experiment
12.2 years ago boczniak767 ▴ 720
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1.8k
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Comment: C: Odd warning in simpleaffy, using quality control
12.2 years ago boczniak767 ▴ 720
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2
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1.8k
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Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.2 years ago by ▴ 280 • written 12.2 years ago by ▴ 720
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1.1k
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Answer: A: meta-analysis with RankProd
12.2 years ago boczniak767 ▴ 720
0
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0
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754
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down-weighting control probes in limma (with Agilent arrays)?
Normalization limma Normalization limma
12.3 years ago boczniak767 ▴ 720
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1
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2.7k
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Answer: A: Access to archived versions of Ensembl with biomaRt
12.4 years ago boczniak767 ▴ 720
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0
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1.6k
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Answer: A: Limma question
12.4 years ago boczniak767 ▴ 720
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0
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671
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expression array normalization and different comparisons: an only "total" normalization or a normalization per comparison?
Normalization Normalization
12.4 years ago boczniak767 ▴ 720
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0
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653
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\"normalize a subset of affy data\" AND \"R help function\"
Normalization affy Normalization affy
12.5 years ago boczniak767 ▴ 720
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3
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1.5k
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Two channel data vs. one colour data for PCA, heatmaps and clustering
limma limma
updated 12.5 years ago by ▴ 120 • written 12.5 years ago by ▴ 720
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0
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779
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[limma] Unreliable spots - omitting in avereps
probe limma probe limma
12.5 years ago boczniak767 ▴ 720
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1
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1.1k
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Answer: A: MA plots for large number of arrays
12.5 years ago boczniak767 ▴ 720
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1
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895
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limma printer layout
Microarray limma Microarray limma
updated 12.6 years ago by 50k • written 12.6 years ago by ▴ 720
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0
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931
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a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
12.6 years ago boczniak767 ▴ 720
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0
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1.5k
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Answer: A: read.maimage error message
12.6 years ago boczniak767 ▴ 720
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