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4
votes
11
replies
604
views
Size factor normalized counts for between sample comparisons - correct?
DESeq2
23 days ago • updated 21 days ago boczniak767 ▴ 740
1
vote
1
reply
314
views
LRT, pairwise comparisons and p-value adjustment
DESeq2
updated 3 months ago by 67k • written 3 months ago by ▴ 740
1
vote
8
replies
553
views
Slightly different count plots from R and spreadsheet
DESeq2 ggplot2
4 months ago boczniak767 ▴ 740
1
vote
3
replies
515
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 4 months ago by 67k • written 4 months ago by ▴ 740
1
vote
5
replies
597
views
vst transformation and zero counts
DESeq2
updated 7 months ago by ★ 4.4k • written 7 months ago by ▴ 740
3
votes
6
replies
966
views
Average biological replicates in RNA-seq
Mfuzz RNASeq
7 months ago boczniak767 ▴ 740
1
vote
4
replies
692
views
goseq, warning and strange plot from nullp
goseq
7 months ago boczniak767 ▴ 740
0
votes
0
replies
565
views
Plot profiles for each group - spline analysis in edgeR
timecoursedata edgeR
updated 18 months ago by 51k • written 18 months ago by ▴ 740
3
votes
20
replies
2.5k
views
Time-course, comparison of two groups
edgeR
18 months ago • updated 17 months ago boczniak767 ▴ 740
0
votes
1
reply
411
views
Time-course for three-factor design
DESeq2
updated 18 months ago by 42k • written 18 months ago by ▴ 740
0
votes
0
replies
968
views
Loading eSet.r objects from ArrayExpress
10.9 years ago boczniak767 ▴ 740
0
votes
0
replies
757
views
does contamination bother the normalization in transcriptome analysis
Normalization Normalization
11.3 years ago boczniak767 ▴ 740
0
votes
5
replies
2.0k
views
XML package - 500 internal server error
GEOquery ArrayExpress GEOquery ArrayExpress
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 740
1
vote
1
reply
1.3k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.6 years ago boczniak767 ▴ 740
0
votes
0
replies
744
views
Windows or Excel to R txt file
11.7 years ago boczniak767 ▴ 740
0
votes
2
replies
1.9k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.6 years ago by ▴ 280 • written 12.6 years ago by ▴ 740
0
votes
0
replies
796
views
down-weighting control probes in limma (with Agilent arrays)?
Normalization limma Normalization limma
12.7 years ago boczniak767 ▴ 740
0
votes
0
replies
714
views
expression array normalization and different comparisons: an only "total" normalization or a normalization per comparison?
Normalization Normalization
12.7 years ago boczniak767 ▴ 740
0
votes
0
replies
698
views
\"normalize a subset of affy data\" AND \"R help function\"
Normalization affy Normalization affy
12.8 years ago boczniak767 ▴ 740
0
votes
3
replies
1.7k
views
Two channel data vs. one colour data for PCA, heatmaps and clustering
limma limma
updated 12.9 years ago by ▴ 120 • written 12.9 years ago by ▴ 740
0
votes
0
replies
862
views
[limma] Unreliable spots - omitting in avereps
probe limma probe limma
12.9 years ago boczniak767 ▴ 740
0
votes
1
reply
978
views
limma printer layout
Microarray limma Microarray limma
updated 12.9 years ago by 51k • written 12.9 years ago by ▴ 740
0
votes
0
replies
989
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
12.9 years ago boczniak767 ▴ 740
0
votes
2
replies
1.1k
views
poe.mcmc - phenotypic label - coding
metaArray metaArray
updated 13.0 years ago by ▴ 40 • written 13.0 years ago by ▴ 740
0
votes
2
replies
4.5k
views
Duplicated Gene IDs - averaging
convert metaArray convert metaArray
13.0 years ago boczniak767 ▴ 740
0
votes
3
replies
3.7k
views
missing value where TRUE/FALSE needed (metaArray)
metaArray metaArray
updated 13.0 years ago by ▴ 40 • written 13.0 years ago by ▴ 740
0
votes
1
reply
1.1k
views
[simpleaffy] maizecdf.qcdef
simpleaffy simpleaffy
13.0 years ago boczniak767 ▴ 740
0
votes
1
reply
750
views
[limma] 0 weights = removed from analysis?
limma limma
updated 13.1 years ago by 51k • written 13.1 years ago by ▴ 740
0
votes
0
replies
763
views
Incorporating direct arrays to reference design
13.1 years ago boczniak767 ▴ 740
0
votes
4
replies
1.3k
views
[limma] Strange results in contrasts with dye-swap
13.1 years ago boczniak767 ▴ 740
0
votes
2
replies
1.6k
views
Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
13.1 years ago boczniak767 ▴ 740
0
votes
0
replies
530
views
[maSigPro] Splitting data - how?
13.4 years ago boczniak767 ▴ 740
0
votes
0
replies
1.1k
views
[Mfuzz] y-axis values
Clustering Mfuzz Clustering Mfuzz
13.5 years ago boczniak767 ▴ 740
0
votes
0
replies
734
views
prepare data matrix for siggenes
13.5 years ago boczniak767 ▴ 740
0
votes
3
replies
4.0k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz Mfuzz
updated 4 months ago by • 0 • written 13.5 years ago by ▴ 740
0
votes
2
replies
1.3k
views
How to generate Spot Types File?
GO limma casper GO limma casper
updated 13.5 years ago by ▴ 140 • written 13.5 years ago by ▴ 740
0
votes
3
replies
1.4k
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro maSigPro
updated 13.9 years ago by ▴ 90 • written 13.9 years ago by ▴ 740
0
votes
0
replies
891
views
Questions about model matrix, logFC and adjusted P.value of t-test
13.9 years ago boczniak767 ▴ 740
0
votes
1
reply
1.3k
views
clustering of microarray time-series data
Microarray Clustering limma maSigPro Microarray Clustering limma maSigPro
updated 13.9 years ago by ▴ 240 • written 13.9 years ago by ▴ 740
0
votes
0
replies
771
views
how to save the expression values for two color data after normalization
Annotation Annotation
14.0 years ago boczniak767 ▴ 740
0
votes
1
reply
1.1k
views
Long Time Series analysis
Microarray Yeast Microarray Yeast
updated 14.1 years ago by ▴ 230 • written 14.1 years ago by ▴ 740
0
votes
0
replies
779
views
[maSigPro] get.siggenes, PlotGroups - results
Regression Regression
14.4 years ago boczniak767 ▴ 740
0
votes
1
reply
836
views
single channel analysis
Annotation Normalization limma ASSIGN Annotation Normalization limma ASSIGN
updated 14.4 years ago by ▴ 860 • written 14.4 years ago by ▴ 740
0
votes
1
reply
1.9k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro maSigPro
updated 14.4 years ago by ▴ 90 • written 14.4 years ago by ▴ 740
0
votes
3
replies
1.6k
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization limma maSigPro Normalization limma maSigPro
updated 14.4 years ago by ▴ 90 • written 14.4 years ago by ▴ 740
0
votes
0
replies
991
views
[MAANOVA] Contrasts for interaction levels - possible?
maanova maanova
14.5 years ago boczniak767 ▴ 740
0
votes
3
replies
1.7k
views
[MAANOVA] Warnings in fitmaanova & information request
maanova oligo maanova oligo
14.5 years ago boczniak767 ▴ 740
0
votes
0
replies
1.1k
views
Loop design - biological, technical replication
limma maanova limma maanova
14.5 years ago boczniak767 ▴ 740
0
votes
2
replies
1.1k
views
Loop design - biological, technical replication and contrasts
limma limma
updated 14.6 years ago by ▴ 240 • written 14.6 years ago by ▴ 740
0
votes
0
replies
740
views
Loop design - biological, technical replication and contrasts
limma limma
14.6 years ago boczniak767 ▴ 740
50 results • Page 1 of 1
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