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2.8k
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Meta data for gene from GEO
GEOquery GEOmetadb GEOquery GEOmetadb
updated 12.0 years ago by 21k • written 12.0 years ago by ★ 13k
0
votes
1
reply
2.9k
views
confused with edgeR: multiple groups vs one control
Arabidopsis thaliana limma edgeR Arabidopsis thaliana limma edgeR
updated 12.0 years ago by ▴ 880 • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.0k
views
Count outlier detection and endogenous gene normalization
DESeq2 DESeq2
updated 12.0 years ago by 43k • written 12.0 years ago by ★ 13k
0
votes
2
replies
2.1k
views
easyRNASeq for miRNA read counts
DESeq DESeq
updated 12.0 years ago by ▴ 320 • written 12.0 years ago by ★ 13k
0
votes
0
replies
1.4k
views
virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2 virtualArray hgu133plus2 virtualArray
12.0 years ago Guest User ★ 13k
0
votes
3
replies
2.2k
views
plot QuSAGE problem
Pathways qusage Pathways qusage
updated 12.0 years ago by ▴ 20 • written 12.0 years ago by ★ 13k
0
votes
2
replies
4.6k
views
Gene filtering for RNA-seq data
Normalization GO Network HTSFilter DESeq2 Normalization GO Network HTSFilter DESeq2
updated 12.0 years ago by 43k • written 12.0 years ago by ★ 13k
0
votes
0
replies
1.8k
views
APE package on phylogenetic tree plot
12.0 years ago Guest User ★ 13k
0
votes
1
reply
1.3k
views
DiffBind and GRanges error extracting overlapping peaks using dba.overlap
DiffBind DiffBind
updated 12.0 years ago by ★ 5.2k • written 12.0 years ago by ★ 13k
0
votes
0
replies
978
views
Separate channel analysis of two color micro arrays: avereps and intraspotCorrelation functions
limma limma
12.0 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
Bioconductor CMA PLS DA
CMA CMA
12.0 years ago Guest User ★ 13k
0
votes
7
replies
3.5k
views
GTF file error when using easyRNAseq�
Annotation Organism BSgenome BSgenome DESeq easyRNASeq Annotation Organism BSgenome DESeq
updated 12.0 years ago by ★ 1.2k • written 12.0 years ago by ★ 13k
0
votes
0
replies
1.4k
views
use selectWeka() for feature selection
BioSeqClass BioSeqClass
12.0 years ago Guest User ★ 13k
1
vote
1
reply
995
views
On empirical Bayes of edgeR
updated 12.0 years ago by 53k • written 12.1 years ago by ★ 13k
0
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0
replies
2.1k
views
Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
12.0 years ago Guest User ★ 13k
0
votes
1
reply
912
views
Oligo package error
updated 12.0 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
3
replies
1.9k
views
rhdf5 write/read inconsistency
rhdf5 rhdf5
updated 12.1 years ago by ★ 1.3k • written 12.1 years ago by ★ 13k
0
votes
2
replies
1.6k
views
unable to install \"ALL\"
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ★ 13k
0
votes
1
reply
3.1k
views
incorrect number of dimensions
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ★ 13k
0
votes
3
replies
2.2k
views
Summarisation in oligo package after exclusion of probes containing SNPs
probe affy oligo probe affy oligo
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ★ 13k
0
votes
0
replies
1.2k
views
Problem with GenomicRanges 1.14.3, as(from, \"GRanges\") not working for RleViewsList
GenomicRanges GenomicRanges
12.1 years ago Guest User ★ 13k
0
votes
2
replies
1.4k
views
� SequenceAnalysisData� is not available
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ★ 13k
0
votes
2
replies
2.1k
views
getAnnMap: package hugene10stv1 not available
updated 12.1 years ago by 6.7k • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.2k
views
2d loess
updated 12.1 years ago by 6.7k • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.9k
views
rtrackleyer/GenomicRanges: How can I group GRanges by metadata attributes
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Patient and matched control paired data
edgeR edgeR
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
0
replies
1.7k
views
Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome QuasR BSgenome convert BSgenome QuasR
12.1 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
Error in heatmapSig function
HTqPCR HTqPCR
12.1 years ago Guest User ★ 13k
0
votes
0
replies
898
views
Problem with the oligo package for nimblegen analysis
12.1 years ago Guest User ★ 13k
0
votes
3
replies
3.9k
views
Working with ensembl 73 & BSGenome
Annotation BSgenome TranscriptDb biomaRt BSgenome Annotation BSgenome TranscriptDb biomaRt
updated 12.1 years ago by 16k • written 12.1 years ago by ★ 13k
1
vote
2
replies
1.8k
views
dmrFinder error
bsseq bsseq
updated 12.1 years ago by ★ 6.5k • written 12.1 years ago by ★ 13k
0
votes
7
replies
2.5k
views
oligo package reading in cel files
affy affy
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
0
replies
993
views
rhdf5, dataframes, and variable length strings
rhdf5 rhdf5
12.1 years ago Guest User ★ 13k
0
votes
6
replies
2.0k
views
Installing library package (Marmoset Gene 1.0 ST Array) into R environment
cdf cdf
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
2
replies
5.0k
views
Reading a FASTA file in R
updated 12.1 years ago by 25k • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.4k
views
MEDIPS rms normalization by input
Coverage MEDIPS Coverage MEDIPS
updated 12.1 years ago by ▴ 570 • written 12.1 years ago by ★ 13k
0
votes
1
reply
788
views
Extracting genes associated to GO terms
GO ath1121501 GO ath1121501
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
0
replies
1.4k
views
readVcf fails when ALT field contains breakends and no symbolic allele
12.1 years ago Guest User ★ 13k
0
votes
1
reply
1.1k
views
Integration of different microarray data (same platform)
updated 12.1 years ago by ▴ 830 • written 12.1 years ago by ★ 13k
0
votes
0
replies
1.3k
views
minfi: RGChannelSet
minfi minfi
12.1 years ago Guest User ★ 13k
0
votes
2
replies
2.0k
views
Question about rtracklayer GenomicRanges bed export order
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ★ 13k
0
votes
3
replies
1.7k
views
edgeR adding RefSeq IDs
GO GO
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
1
reply
2.8k
views
pathview -- ID Problem?
Annotation pathview Annotation pathview
updated 12.1 years ago by ★ 1.6k • written 12.1 years ago by ★ 13k
0
votes
1
reply
2.2k
views
Installing Gostat
GOstats GOstats
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
votes
13
replies
2.1k
views
Retreving mRNA subsequence (GenomicFeatures, BSgenome)
BSgenome BSgenome BSgenome BSgenome
updated 12.1 years ago by ▴ 210 • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Rsamtools: readGAlignmentsFromBam weird behavior reading MAPQ and RNEXT fields
Alignment Alignment
updated 12.1 years ago by 16k • written 12.1 years ago by ★ 13k
0
votes
0
replies
751
views
Setting weight to agilent source
12.1 years ago Guest User ★ 13k
0
votes
0
replies
1.3k
views
GenomicFeatures loadDb error
12.1 years ago Guest User ★ 13k
0
votes
3
replies
1.9k
views
arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 12.1 years ago by ▴ 10 • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.3k
views
maSigPro dataset information
maSigPro maSigPro
12.1 years ago Guest User ★ 13k
1,206 results • Page 10 of 25
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