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Non-specific filtering of Affymetrix Microarray data
GO hgu95av2 GO hgu95av2
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
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1
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1.7k
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flowcore/flowviz filter
flowCore flowViz flowCore flowViz
updated 11.8 years ago by ★ 1.3k • written 11.8 years ago by ★ 13k
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5
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2.7k
views
DESeq2
DESeq DESeq2 DESeq DESeq2
updated 11.8 years ago by 43k • written 11.8 years ago by ★ 13k
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1.6k
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edgeR: regarding Poisson distribution and goodness of fit graph
Normalization graph edgeR Normalization graph edgeR
11.8 years ago Guest User ★ 13k
0
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7
replies
1.8k
views
Memory problem with rma()
updated 11.8 years ago by ▴ 600 • written 11.8 years ago by ★ 13k
0
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1
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1.9k
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how to determine what kind of dispersion to use
graph edgeR graph edgeR
updated 11.8 years ago by ★ 7.9k • written 11.8 years ago by ★ 13k
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0
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1.3k
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Problems with using Pearson correlation in hcluster / hclust2treeview
Clustering Clustering
11.8 years ago Guest User ★ 13k
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3
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1.7k
views
How limma Deals With Correlation Across Replicates
limma limma
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
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2
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3.5k
views
EdgeR norm.factors input
Normalization edgeR DESeq Normalization edgeR DESeq
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
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6
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1.8k
views
error with pd.ragene1.0.st.v1 and oligo
updated 11.8 years ago by ▴ 30 • written 11.8 years ago by ★ 13k
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2
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1.4k
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Can we use Intraclass correlation (ICC) to optimize clustering parameters?
GO Clustering rat2302 affy GO Clustering rat2302 affy
updated 11.8 years ago by ★ 4.2k • written 11.8 years ago by ★ 13k
0
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0
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735
views
Filtering Post-Normalization With limma
Normalization probe limma Normalization probe limma
11.8 years ago Guest User ★ 13k
0
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1
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1.8k
views
EdgeR norm.factor input
Normalization edgeR Normalization edgeR
updated 23 months ago by 53k • written 11.8 years ago by ★ 13k
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3
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7.3k
views
limma differences with and without an intercept
limma limma
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
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3
replies
1.3k
views
readGAlignmentPairsFromBam and readGAlignmentFromBam differences
updated 11.8 years ago by 16k • written 11.8 years ago by ★ 13k
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3
replies
2.1k
views
mzR install requires deprecated header file
mzR mzR
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
0
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1
reply
1.2k
views
referencecn.mops: limit on number of tumor-normal pairs?
updated 11.8 years ago by ▴ 540 • written 11.8 years ago by ★ 13k
0
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1
reply
665
views
zero values and lib.size
edgeR edgeR
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
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7
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2.5k
views
Gene Ontology Annotations from Gene Names
Microarray GO Organism PROcess GOstats Microarray GO Organism PROcess GOstats
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
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5
replies
5.4k
views
Problem with exporting graph from plotPCA() in a DESeq2 function
graph DESeq2 graph DESeq2
updated 11.8 years ago by 43k • written 11.8 years ago by ★ 13k
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0
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1.4k
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Failure to Install Organism Package from AnnotationForge
Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge
11.8 years ago Guest User ★ 13k
0
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1
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956
views
EdgeR multi-factor testing questions
Normalization edgeR Normalization edgeR
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
0
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1
reply
1.2k
views
Why nbinomGLMTest in DESeq reports zero p values
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
0
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7
replies
2.2k
views
edgeR: adjusting prior.n
edgeR edgeR
updated 3.7 years ago by 53k • written 11.8 years ago by ★ 13k
0
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1
reply
1.2k
views
error in calculate integer copy numbers. bug?
cn.mops cn.mops
updated 11.8 years ago by ▴ 540 • written 11.8 years ago by ★ 13k
0
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6
replies
2.1k
views
Problem with filtering genes in biomaRt
biomaRt biomaRt
updated 11.8 years ago by ▴ 800 • written 11.8 years ago by ★ 13k
0
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4
replies
2.7k
views
in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
0
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3
replies
1.7k
views
Design/Contrast Matrix for Two Channel Microarray
Microarray limma PROcess Microarray limma PROcess
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
0
votes
2
replies
772
views
limma lmFit returns different results on different computers
limma limma
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
0
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1
reply
1.3k
views
plotting both
ideogram ideogram
updated 11.8 years ago by ▴ 50 • written 11.8 years ago by ★ 13k
0
votes
2
replies
879
views
Updating issues
DESeq2 DESeq2
updated 11.8 years ago by ★ 1.3k • written 11.8 years ago by ★ 13k
0
votes
5
replies
913
views
Ontology
PROcess PROcess
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.8k
views
Using GOstats with ScanArray Express Data
Organism probe convert GOstats Organism probe convert GOstats
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
0
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4
replies
1.7k
views
edgeR
edgeR edgeR
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
0
votes
3
replies
1.4k
views
EdgeR multi-factors testing questions
edgeR edgeR
updated 11.8 years ago by 53k • written 11.8 years ago by ★ 13k
0
votes
0
replies
820
views
Best way of presenting a sub-fraction of edgeR RNAseq gene expression results in a publication
11.8 years ago Guest User ★ 13k
0
votes
1
reply
1.9k
views
FlowCore: problem with reading and writing fcs files
updated 11.8 years ago by ★ 1.3k • written 11.8 years ago by ★ 13k
0
votes
1
reply
948
views
Unit tests with DNAString objects
updated 11.8 years ago by 16k • written 11.8 years ago by ★ 13k
1
vote
2
replies
3.6k
views
Defining the model matrix for a multi-factorial design with interactions - edgeR
edgeR edgeR
updated 11.8 years ago by ★ 7.9k • written 11.8 years ago by ★ 13k
0
votes
0
replies
1.3k
views
calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
11.8 years ago Guest User ★ 13k
0
votes
0
replies
1.4k
views
Answer: A: EdgeR multi-factors testing questions
11.8 years ago Guest User ★ 13k
0
votes
2
replies
1.3k
views
restoring lattice-like format in flowViz?
PROcess flowCore PROcess flowCore
updated 11.8 years ago by ★ 1.3k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.0k
views
Tool inqured to analysis array expression and cell line screening data
Cancer Cancer
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Multiple comparisons: inquiries on level factors and wording used in resultsNames
updated 11.8 years ago by 43k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.5k
views
Follow-up: Multiple comparisons using contrast
updated 11.8 years ago by 43k • written 11.8 years ago by ★ 13k
0
votes
3
replies
1.6k
views
Agi4x44Preprocess - error on read.AgilentFE fucntion
limma Agi4x44PreProcess limma Agi4x44PreProcess
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
0
votes
2
replies
1.1k
views
paCalls() in oligo package fails for exon arrays (Error in normalizeSingleBracketSubscript)
oligo oligo
updated 11.8 years ago by ★ 4.3k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Design matrix in Combat algorithm
sva sva
updated 11.8 years ago by ▴ 870 • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Get actual coordinates for the predicted loci
segmentSeq segmentSeq
updated 11.8 years ago by ▴ 180 • written 11.8 years ago by ★ 13k
0
votes
2
replies
2.4k
views
bsmooth and bsseq for RRBS
bsseq bsseq
updated 11.8 years ago by ★ 4.2k • written 11.8 years ago by ★ 13k
1,206 results • Page 7 of 25
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