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suggestions/comments on DESeq transcript wise analysis
convert DESeq convert DESeq
written 13.0 years ago by ▴ 190
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
5.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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3.3k
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
5.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
votes
2
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3.3k
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
5.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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8
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3.3k
views
DESeq2 PC1 variance on the PCA plot does not match proportion of variance
deseq2
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 190
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0
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3.1k
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Comment: C: EdgeR vs DESeq2 with/without lfcShrink
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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1
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3.1k
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Comment: C: EdgeR vs DESeq2 with/without lfcShrink
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
4
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5
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3.1k
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EdgeR vs DESeq2 with/without lfcShrink
EdgeR and DESeq2
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 190
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0
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1.1k
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Comment: C: DESeq2 - order of covariates in the design
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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1.1k
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Comment: C: DESeq2 - order of covariates in the design
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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4
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1.1k
views
DESeq2 - order of covariates in the design
deseq2
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 190
0
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1
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2.1k
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Comment: C: CQN offset and edgeR
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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2
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2.1k
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Comment: C: CQN offset and edgeR
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
2
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9
replies
2.1k
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CQN offset and edgeR
CQN and edgeR
updated 6.4 years ago by ★ 13k • written 6.4 years ago by ▴ 190
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1
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2.1k
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Comment: C: CQN offset and edgeR
6.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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1.0k
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DESeq2 - is VSD data normalized for covariates in the model
deseq2
updated 6.4 years ago by ★ 3.0k • written 6.4 years ago by ▴ 190
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0
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5.9k
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Comment: C: Correcting for known and surrogate variables in DESeq2
7.9 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
5
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7
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5.9k
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Correcting for known and surrogate variables in DESeq2
deseq2 svaseq
8.3 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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5.9k
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Answer: A: Correcting for known and surrogate variables in DESeq2
8.3 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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5
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1.8k
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filtering before using DESeq
DESeq DESeq
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 190
0
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0
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1.8k
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Comment: C: filtering before using DESeq
12.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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0
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1.8k
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Comment: C: filtering before using DESeq
12.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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0
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1.9k
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Comment: C: HT-seq counting - gene vs isoform
12.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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2
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1.9k
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HT-seq counting - gene vs isoform
updated 12.2 years ago by ★ 3.8k • written 12.2 years ago by ▴ 190
0
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1
reply
972
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clarification on DEXSeq output
DEXSeq DEXSeq
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 190
0
votes
1
reply
906
views
error in DEXSeq version 1.3.13
DEXSeq DEXSeq
updated 12.5 years ago by ★ 1.9k • written 12.5 years ago by ▴ 190
0
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2
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1.9k
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counts from HTSeq vs DEXSeq
DEXSeq DEXSeq
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 190
0
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0
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1.9k
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Comment: C: counts from HTSeq vs DEXSeq
12.5 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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2
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1.2k
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easyRNAseq question
Category DESeq easyRNASeq Category DESeq easyRNASeq
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 190
0
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1
reply
893
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DEXSeq question
DEXSeq DEXSeq
updated 12.6 years ago by ★ 1.9k • written 12.6 years ago by ▴ 190
0
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1
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1.2k
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Comment: C: easyRNAseq question
12.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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1.2k
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Answer: A: easyRNAseq question
12.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
reply
962
views
Standard error and confidence intervals in DESeq?
Genetics DESeq Genetics DESeq
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 190
0
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4
replies
1.2k
views
help with DESeq
Genetics Genetics
updated 13.1 years ago by ★ 3.8k • written 13.1 years ago by ▴ 190
0
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0
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1.2k
views
Comment: C: help with DESeq
13.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
reply
1.2k
views
Comment: C: help with DESeq
13.1 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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