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suggestions/comments on DESeq transcript wise analysis
convert DESeq convert DESeq
written 12.2 years ago by ▴ 190
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
4.5 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
4.5 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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2
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2.7k
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Comment: C: DESeq2 PC1 variance on the PCA plot does not match proportion of variance
4.5 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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8
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2.7k
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DESeq2 PC1 variance on the PCA plot does not match proportion of variance
deseq2
updated 4.5 years ago by 41k • written 4.5 years ago by ▴ 190
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2.5k
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Comment: C: EdgeR vs DESeq2 with/without lfcShrink
5.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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1
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2.5k
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Comment: C: EdgeR vs DESeq2 with/without lfcShrink
5.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
4
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5
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2.5k
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EdgeR vs DESeq2 with/without lfcShrink
EdgeR and DESeq2
updated 5.6 years ago by ★ 28k • written 5.6 years ago by ▴ 190
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0
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910
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Comment: C: DESeq2 - order of covariates in the design
5.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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910
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Comment: C: DESeq2 - order of covariates in the design
5.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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4
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910
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DESeq2 - order of covariates in the design
deseq2
updated 5.7 years ago by 41k • written 5.7 years ago by ▴ 190
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1
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1.7k
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Comment: C: CQN offset and edgeR
5.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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2
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1.7k
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Comment: C: CQN offset and edgeR
5.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
2
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9
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1.7k
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CQN offset and edgeR
CQN and edgeR
updated 5.7 years ago by ★ 13k • written 5.7 years ago by ▴ 190
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1
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1.7k
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Comment: C: CQN offset and edgeR
5.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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694
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DESeq2 - is VSD data normalized for covariates in the model
deseq2
updated 5.7 years ago by ★ 3.0k • written 5.7 years ago by ▴ 190
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Comment: C: Correcting for known and surrogate variables in DESeq2
7.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
5
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7
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5.2k
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Correcting for known and surrogate variables in DESeq2
deseq2 svaseq
7.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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1
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5.2k
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Answer: A: Correcting for known and surrogate variables in DESeq2
7.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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5
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1.6k
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filtering before using DESeq
DESeq DESeq
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 190
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1.6k
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Comment: C: filtering before using DESeq
11.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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0
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1.6k
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Comment: C: filtering before using DESeq
11.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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0
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1.7k
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Comment: C: HT-seq counting - gene vs isoform
11.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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2
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1.7k
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HT-seq counting - gene vs isoform
updated 11.4 years ago by ★ 3.7k • written 11.4 years ago by ▴ 190
0
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1
reply
871
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clarification on DEXSeq output
DEXSeq DEXSeq
updated 11.8 years ago by ★ 3.7k • written 11.8 years ago by ▴ 190
0
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1
reply
784
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error in DEXSeq version 1.3.13
DEXSeq DEXSeq
updated 11.8 years ago by ★ 1.9k • written 11.8 years ago by ▴ 190
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2
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1.8k
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counts from HTSeq vs DEXSeq
DEXSeq DEXSeq
updated 11.8 years ago by ★ 3.7k • written 11.8 years ago by ▴ 190
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1.8k
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Comment: C: counts from HTSeq vs DEXSeq
11.8 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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2
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1.0k
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easyRNAseq question
Category DESeq easyRNASeq Category DESeq easyRNASeq
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 190
0
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1
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783
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DEXSeq question
DEXSeq DEXSeq
updated 11.9 years ago by ★ 1.9k • written 11.9 years ago by ▴ 190
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1
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1.1k
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Comment: C: easyRNAseq question
11.9 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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1.1k
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Answer: A: easyRNAseq question
11.9 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
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857
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Standard error and confidence intervals in DESeq?
Genetics DESeq Genetics DESeq
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 190
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4
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1.1k
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help with DESeq
Genetics Genetics
updated 12.4 years ago by ★ 3.7k • written 12.4 years ago by ▴ 190
0
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0
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1.1k
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Comment: C: help with DESeq
12.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
0
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1
reply
1.1k
views
Comment: C: help with DESeq
12.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
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