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Is it possible to combine count gene expression data coming from one sequencing technology (RNA seq) with intensity gene expression data coming from …
DESeq2
RNASeqData
edgeR
limma
DifferentialExpression
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Sep
• 0
0
votes
1
reply
382
views
Can a expressed gene dataset yielded after CPM be used in DESeq2 and EdgeR?
DESeq2
edgeR
updated 12 months ago by
Guido Hooiveld
★ 3.9k • written 12 months ago by
Sep
• 0
0
votes
0
replies
699
views
Comment:
Comment: DispEsts plot
13 months ago
Sep
• 0
0
votes
1
reply
699
views
Comment:
Comment: DispEsts plot
13 months ago
Sep
• 0
0
votes
1
reply
699
views
Comment:
Comment: DispEsts plot
13 months ago
Sep
• 0
0
votes
6
replies
699
views
DispEsts plot
DESeq2
13 months ago
Sep
• 0
0
votes
1
reply
579
views
Comment:
Comment: Does it make sense to have so many statistically significant gene differentially
13 months ago
Sep
• 0
0
votes
3
replies
579
views
Does it make sense to have so many statistically significant gene differentially expressed after DESeq2 paired sample analysis?
DESeq2
updated 13 months ago by
Michael Love
41k • written 13 months ago by
Sep
• 0
0
votes
0
replies
492
views
Some questions regarding using limma and interpretation
limma
13 months ago
Sep
• 0
0
votes
1
reply
715
views
Comment:
Comment: Does the running time of DESeq function is much more longer for design factor co
13 months ago
Sep
• 0
0
votes
1
reply
715
views
Comment:
Comment: Does the running time of DESeq function is much more longer for design factor co
13 months ago
Sep
• 0
0
votes
7
replies
715
views
Does the running time of DESeq function is much more longer for design factor containing two variable compare to design factor containing only one v…
DESeq2
updated 13 months ago by
Michael Love
41k • written 13 months ago by
Sep
• 0
0
votes
1
reply
715
views
Comment:
Comment: Does the running time of DESeq function is much more longer for design factor co
13 months ago
Sep
• 0
0
votes
0
replies
2.6k
views
Comment:
Comment: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
13 months ago
Sep
• 0
1
vote
10
replies
2.6k
views
Is there any chance to solve "the model matrix is not full rank" in DESeq2?
DESeq2
13 months ago
Sep
• 0
0
votes
0
replies
2.6k
views
Comment:
Comment: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
13 months ago
Sep
• 0
0
votes
1
reply
2.6k
views
Comment:
Comment: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
13 months ago
Sep
• 0
0
votes
1
reply
2.6k
views
Comment:
Comment: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
13 months ago
Sep
• 0
0
votes
0
replies
2.6k
views
Comment:
Comment: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
13 months ago
Sep
• 0
0
votes
2
replies
485
views
Does DESeq2 work for investigating the gene differential expression before and after the treat but in the same sample?
DESeq2
updated 14 months ago by
Michael Love
41k • written 14 months ago by
Sep
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: Do the count values should be only integer to be able to use DESeq2?
15 months ago
Sep
• 0
1
vote
3
replies
1.7k
views
Do the count values should be only integer to be able to use DESeq2?
DESeq2
15 months ago
Sep
• 0
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