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Comment: C: Extending limma to cover "non-linear" dose response models e.g. Hill, Exponenti
6.5 years ago Pekka Kohonen ▴ 190
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Comment: C: Getting data/objects to workers in bplapply inside a function
6.5 years ago Pekka Kohonen ▴ 190
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Getting data/objects to workers in bplapply inside a function
biocparallel
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 190
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Comment: C: BiocParallel on Windows : cannot find my functions when using SnowParam
6.5 years ago Pekka Kohonen ▴ 190
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Comment: C: Extending limma to cover "non-linear" dose response models e.g. Hill, Exponenti
6.5 years ago Pekka Kohonen ▴ 190
2
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4
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1.9k
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Extending limma to cover "non-linear" dose response models e.g. Hill, Exponential, etc...
limma dose-response lincs tempO-seq high-throughput transcriptomics
updated 6.5 years ago by 50k • written 6.5 years ago by ▴ 190
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1.9k
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Comment: C: Extending limma to cover "non-linear" dose response models e.g. Hill, Exponenti
6.5 years ago Pekka Kohonen ▴ 190
0
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2.0k
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Comment: C: Statistic for GSA
7.2 years ago Pekka Kohonen ▴ 190
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2.8k
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Comment: C: Meta-Analysis after running limma on a normalized dataset
7.2 years ago Pekka Kohonen ▴ 190
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3
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1.6k
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EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
7.3 years ago • updated 7.2 years ago Pekka Kohonen ▴ 190
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Comment: C: Statistic for GSA
7.2 years ago Pekka Kohonen ▴ 190
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2
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2.0k
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Comment: C: Statistic for GSA
7.2 years ago Pekka Kohonen ▴ 190
0
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1
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1.6k
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Comment: C: EGSEA usage with microarray data (with vooma)?
7.2 years ago Pekka Kohonen ▴ 190
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1
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2.0k
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Answer: A: Statistic for GSA
7.2 years ago Pekka Kohonen ▴ 190
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3.5k
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Comment: C: GO enrichment comparison with other programs
7.3 years ago Pekka Kohonen ▴ 190
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1.3k
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Comment: C: How to submit limma patch
7.8 years ago Pekka Kohonen ▴ 190
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1
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1.6k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 190
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Answer: A: Voom Normalization and negative numbers
10.1 years ago Pekka Kohonen ▴ 190
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4.8k
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Comment: C: EdgeR for proteomics data
10.3 years ago Pekka Kohonen ▴ 190
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12k
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Comment: C: pre-ranked GSEA within R?
10.3 years ago Pekka Kohonen ▴ 190
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12k
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Answer: A: pre-ranked GSEA within R?
10.3 years ago Pekka Kohonen ▴ 190
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1.8k
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Answer: A: question about design for limma time course, 2 conditions and drug treatment mic
10.4 years ago Pekka Kohonen ▴ 190
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1.8k
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Answer: A: question about design for limma time course, 2 conditions and drug treatment mic
10.4 years ago Pekka Kohonen ▴ 190
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2.4k
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Answer: A: Interpretation Fold Change - Limma
10.5 years ago Pekka Kohonen ▴ 190
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886
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Comment: C: ComBat: Working with no replicates
10.5 years ago Pekka Kohonen ▴ 190
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886
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Answer: A: ComBat: Working with no replicates
10.5 years ago Pekka Kohonen ▴ 190
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1.3k
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Answer: A: upload multiple genelists at a time for GO or pathway enrichment
10.5 years ago Pekka Kohonen ▴ 190
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1.8k
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Answer: A: Coercing matrix into expression set, for normalization of only subsets of miRNAs
10.5 years ago Pekka Kohonen ▴ 190
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1.2k
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enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
10.5 years ago Pekka Kohonen ▴ 190
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3.6k
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Comment: C: topGO issues
10.6 years ago Pekka Kohonen ▴ 190
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2
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1.9k
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romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 10.8 years ago by 50k • written 10.8 years ago by ▴ 190
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1.2k
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Answer: A: Analyzing "differential variability" of methylation (and gene expression)
11.1 years ago Pekka Kohonen ▴ 190
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