Bioconductor Gene set testing

Showing : gene set testing • reset

votes

replies

815

views

mroast camera gene set testing

4.5 years ago svlachavas ▴ 840

votes

replies

2.8k

views

limma camera gene set testing ensembl

updated 5.3 years ago by Robert Castelo ★ 3.4k • written 5.3 years ago by Jeremy Beales ▴ 10

votes

replies

1.7k

views

limma agilent microarrays mroast fry gene tests gene set testing

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by svlachavas ▴ 840

votes

replies

1.8k

views

limma camera cameraPR edgeR gene set testing

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by jamie.gearing ▴ 60

vote

replies

1.5k

views

limma roast statistics source code gene set testing

6.6 years ago Andrea Carenzo • 0

votes

1.6k

views

gage gene set testing

updated 6.8 years ago by Luo Weijun ★ 1.6k • written 6.8 years ago by Aurora ▴ 20

votes

replies

2.0k

views

EGSEA gene set testing vooma limma voom gsea

updated 10 months ago by Chris ▴ 20 • written 8.2 years ago by Pekka Kohonen ▴ 190

votes

replies

2.3k

views

limma agilent microarrays gene set testing annotation

8.2 years ago Bouzid.a ▴ 20

votes

replies

2.9k

views

R DESeq2 gene set testing gene expression

8.4 years ago Jon Bråte ▴ 260

votes

replies

1.9k

views

gene set testing camera edger

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by le2336 ▴ 20

vote

replies

1.6k

views

gsea ncrna coexpression gene set analysis gene set testing

8.9 years ago m.fletcher ▴ 20

vote

replies

2.4k

views

limma camera gene set testing

8.9 years ago claire.n.levy ▴ 10

votes

replies

3.5k

views

limma mroast barcodeplot KEGG gene set testing

updated 9.3 years ago by Gordon Smyth 52k • written 9.3 years ago by svlachavas ▴ 840

votes

replies

2.2k

views

gene set testing roast mroast differential gene expression bioconductor

9.9 years ago svlachavas ▴ 840

14 results • Page 1 of 1

Recent ...

Replies

Comment: pairedGSEA input files by shdam ▴ 10

Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …

Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0

Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/

Comment: EdgeR Biological CVs by jeffreestary • 0

By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…

Comment: How to reverse complement some elements of a DNAStringSet by shrill.asp.tufl • 0

Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …

Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10

I am also having issues using BioMart to run code that has worked before. The problem first occurred last week. As I have encountered these…

Votes

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Awards • All