Bioconductor Gene set testing

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gene set testing roast mroast differential gene expression bioconductor

8.9 years ago svlachavas ▴ 830

14 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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