Bioconductor Gene set testing

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mroast camera gene set testing

5.4 years ago svlachavas ▴ 840

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limma camera gene set testing ensembl

updated 6.2 years ago by Robert Castelo ★ 3.4k • written 6.2 years ago by Jeremy Beales ▴ 10

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limma agilent microarrays mroast fry gene tests gene set testing

updated 7.3 years ago by Gordon Smyth 53k • written 7.3 years ago by svlachavas ▴ 840

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limma camera cameraPR edgeR gene set testing

updated 7.4 years ago by Gordon Smyth 53k • written 7.4 years ago by jamie.gearing ▴ 60

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limma roast statistics source code gene set testing

7.5 years ago Andrea Carenzo • 0

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gage gene set testing

updated 7.7 years ago by Luo Weijun ★ 1.6k • written 7.7 years ago by Aurora ▴ 20

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EGSEA gene set testing vooma limma voom gsea

updated 21 months ago by Chris ▴ 20 • written 9.1 years ago by Pekka Kohonen ▴ 190

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limma agilent microarrays gene set testing annotation

9.1 years ago Bouzid.a ▴ 20

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R DESeq2 gene set testing gene expression

9.3 years ago • updated 9.2 years ago Jon Bråte ▴ 270

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gene set testing camera edger

updated 9.6 years ago by Gordon Smyth 53k • written 9.6 years ago by le2336 ▴ 20

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gsea ncrna coexpression gene set analysis gene set testing

9.8 years ago m.fletcher ▴ 20

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limma camera gene set testing

9.8 years ago claire.n.levy ▴ 10

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limma mroast barcodeplot KEGG gene set testing

updated 10.2 years ago by Gordon Smyth 53k • written 10.2 years ago by svlachavas ▴ 840

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gene set testing roast mroast differential gene expression bioconductor

10.7 years ago svlachavas ▴ 840

14 results • Page 1 of 1

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Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Comment: Jobs at Ensembl by frostybuddyy • 0

I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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Popular Question to Guido Hooiveld ★ 4.1k