Showing : EGSEA • reset
0
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102
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EGSEA with Affymetrix data
EGSEA
updated 16 days ago by 64k • written 16 days ago by • 0
0
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1
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196
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA EGSEAdata EGSEA123 DifferentialExpression
updated 3 months ago by 64k • written 3 months ago by • 0
0
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1
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520
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea EGSEA123
7 months ago neilzhao ▴ 30
0
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3
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1.5k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 17 months ago by 3.6k • written 17 months ago by ★ 2.0k
6
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6
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2.5k
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EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 3.1 years ago by • 0 • written 4.4 years ago by ▴ 70
1
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0
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606
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EGSEA - clarification of values in the Stats Table
egsea limma
4.2 years ago rocanja ▴ 60
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2
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1.1k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
4.3 years ago fgol ▴ 10
9
votes
7
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19k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea gsva piano egsea
updated 8 days ago by ▴ 10 • written 6.4 years ago by ▴ 130
0
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1
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1.9k
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DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 5.8 years ago by 48k • written 5.8 years ago by • 0
1
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0
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871
views
EGSEA install licensed KEGG data
EGSEA KEGG EGSEAdata
5.8 years ago john.thompson ▴ 10
0
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0
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745
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Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix egsea
5.9 years ago • updated 5.8 years ago stefano.mangiola ▴ 10
0
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5
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2.4k
views
EGSEA generateReport() error "no adj nodes"
EGSEA EGSEA123
updated 6.0 years ago by ▴ 40 • written 6.0 years ago by ★ 2.0k
1
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1
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1.0k
views
EGSEA : unable to plot heatmaps.
EGSEA R bioconductor
6.2 years ago RV • 0
0
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2
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1.4k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
6.6 years ago irizarnaunk • 0
2
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7
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1.6k
views
EGSEA - failing to write report
EGSEA write
updated 6.8 years ago by ▴ 40 • written 6.8 years ago by ▴ 20
2
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3
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1.5k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
6.9 years ago • updated 6.8 years ago Pekka Kohonen ▴ 190
0
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4
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1.7k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by • 0
17 results • Page 1 of 1
Recent ...
Replies
Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k
If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…
Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0
Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k
That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…
Votes
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: trying to add SingleR label to Seurat Object fails
Comment: DESeq2 - groups with biological replicates from the same patient
Answer: EdgeR: Exact test and glmQLFTest produce very different results
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