Showing : EGSEA • reset
0
votes
3
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222
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Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 7 weeks ago by 3.2k • written 8 weeks ago by ★ 2.0k
6
votes
6
replies
1.5k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 21 months ago by • 0 • written 3.2 years ago by ▴ 70
1
vote
0
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347
views
EGSEA - clarification of values in the Stats Table
egsea limma
2.9 years ago rocanja ▴ 60
0
votes
2
replies
698
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
3.0 years ago fgol ▴ 10
8
votes
6
replies
16k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea gsva piano egsea
updated 17 months ago by ▴ 10 • written 5.1 years ago by ▴ 120
0
votes
1
reply
1.3k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 4.5 years ago by 46k • written 4.5 years ago by • 0
1
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0
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559
views
EGSEA install licensed KEGG data
EGSEA KEGG EGSEAdata
4.5 years ago john.thompson ▴ 10
0
votes
0
replies
485
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix egsea
4.6 years ago stefano.mangiola • 0
0
votes
5
replies
1.8k
views
EGSEA generateReport() error "no adj nodes"
EGSEA EGSEA123
updated 4.7 years ago by ▴ 40 • written 4.7 years ago by ★ 2.0k
1
vote
1
reply
705
views
EGSEA : unable to plot heatmaps.
EGSEA R bioconductor
4.9 years ago RV • 0
0
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2
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992
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
5.3 years ago irizarnaunk • 0
2
votes
7
replies
1.1k
views
EGSEA - failing to write report
EGSEA write
updated 5.5 years ago by ▴ 40 • written 5.5 years ago by ▴ 20
2
votes
3
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1.0k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
5.6 years ago • updated 5.5 years ago Pekka Kohonen ▴ 190
0
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4
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1.1k
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EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 5.9 years ago by ▴ 40 • written 5.9 years ago by • 0
14 results • Page 1 of 1
Recent ...
Replies
Comment: Retrieve gene summary start/end in biomart query by rbenel ▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues by e.iich • 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue by Hervé Pagès 15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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