Showing : EGSEA • reset
5
votes
6
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883
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EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 10 months ago by • 0 • written 2.3 years ago by ▴ 60
1
vote
0
replies
215
views
EGSEA - clarification of values in the Stats Table
egsea limma
2.0 years ago rocanja ▴ 60
0
votes
2
replies
485
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
2.1 years ago fgol ▴ 10
7
votes
6
replies
14k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea gsva piano egsea
updated 6 months ago by ▴ 10 • written 4.2 years ago by ▴ 110
0
votes
1
reply
978
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 3.6 years ago by 43k • written 3.6 years ago by • 0
1
vote
0
replies
442
views
EGSEA install licensed KEGG data
EGSEA KEGG EGSEAdata
3.6 years ago john.thompson ▴ 10
0
votes
0
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383
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix egsea
3.7 years ago stefano.mangiola • 0
0
votes
5
replies
1.4k
views
EGSEA generateReport() error "no adj nodes"
EGSEA EGSEA123
updated 3.8 years ago by ▴ 40 • written 3.8 years ago by ★ 2.0k
1
vote
1
reply
588
views
EGSEA : unable to plot heatmaps.
EGSEA R bioconductor
4.0 years ago RV • 0
0
votes
2
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854
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
4.4 years ago irizarnaunk • 0
2
votes
7
replies
926
views
EGSEA - failing to write report
EGSEA write
updated 4.6 years ago by ▴ 40 • written 4.6 years ago by ▴ 20
2
votes
3
replies
901
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
4.7 years ago • updated 4.6 years ago Pekka Kohonen ▴ 190
0
votes
4
replies
975
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 5.0 years ago by ▴ 40 • written 5.0 years ago by • 0
13 results • Page 1 of 1
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Replies
Comment: unable to load shared object Rsamtools.dll': by Mike Smith ★ 5.1k
Can you include the command you're running (I guess it's `BiocManager::install("Rsamtools", type = "source")` )? It would also be useful to…
Comment: unable to load shared object Rsamtools.dll': by franck.richard • 0
Finally, I only encounter this problem with Rsamtools. It works fine with the other packages. Thank you for your help!
Comment: Unique GPos taking into account mcols by maltethodberg ▴ 140
Yes, I managed to find those functions via the VariantAnnotation package. The "Quad" versions are very handy for matching seqnames/pos/effe…
Answer: Not able to Annotate CpG Island using methylKit by tanmayroy1979 • 0
Hi I resolved the problem. The error was coming because of Chromosome numbering. Bed files was having "Chr" which i removed and resolved…
Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k
I have just confirmed there is no difference between edgeR 3.26.1 and edgeR 3.26.8 by running an analysis similar to yours first with edgeR…
Votes
Comment: Unique GPos taking into account mcols
Comment: deseq2 machine sizing best practices for very large data set
Comment: Warning messages on Apple M1 BigSur
Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
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