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3
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1
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4.6k
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Answer: A: Dispersion fit and p-value distributions
7.3 years ago Bernd Klaus ▴ 610
2
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1
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8.7k
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Answer: A: DESeq2 dispersion and p-value histograms
8.2 years ago Bernd Klaus ▴ 610
0
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0
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8.7k
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Comment: C: DESeq2 dispersion and p-value histograms
8.2 years ago Bernd Klaus ▴ 610
0
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0
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2.9k
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
8.3 years ago Bernd Klaus ▴ 610
3
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6
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3.9k
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function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress xml rcurl http EBI
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 610
0
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1
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3.9k
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Comment: C: function getAE from ArrayExpress needs update because EBI has switched to https
8.3 years ago Bernd Klaus ▴ 610
2
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0
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4.0k
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Answer: A: DESEq2 p-values weird distribution under the H0 and fdrtool
8.4 years ago Bernd Klaus ▴ 610
0
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0
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5.5k
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Answer: A: Alternative packages to limma for analysis of microarray datasets
8.7 years ago Bernd Klaus ▴ 610
0
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0
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4.0k
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Answer: A: Inspection and Correction of p-values in DESeq2 pipeline by Bernd
8.9 years ago Bernd Klaus ▴ 610
0
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1
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4.0k
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Comment: C: Inspection and Correction of p-values in DESeq2 pipeline by Bernd
8.9 years ago Bernd Klaus ▴ 610
1
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1
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2.6k
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Answer: A: How to use 'IHW' package to filter genes?
9.0 years ago Bernd Klaus ▴ 610
1
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0
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3.0k
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Comment: C: Design formula for use with DESeq2 with SVA
9.1 years ago Bernd Klaus ▴ 610
0
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0
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1.7k
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Answer: A: No counts generated when running python counting script.
9.2 years ago Bernd Klaus ▴ 610
1
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0
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3.6k
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Comment: C: DESeq2 interaction term
9.3 years ago Bernd Klaus ▴ 610
1
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0
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3.6k
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Comment: C: DESeq2 interaction term
9.3 years ago Bernd Klaus ▴ 610
1
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0
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1.5k
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Answer: A: About interaction effect 2
9.3 years ago Bernd Klaus ▴ 610
2
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0
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3.6k
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Answer: A: DESeq2 interaction term
9.3 years ago Bernd Klaus ▴ 610
3
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0
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2.5k
views
Answer: A: Problem using sva with limma for microarray DE analysis
9.3 years ago Bernd Klaus ▴ 610
2
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1
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6.6k
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Comment: C: Correcting for known and surrogate variables in DESeq2
9.3 years ago Bernd Klaus ▴ 610
2
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1
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2.5k
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Answer: A: Problem using sva with limma for microarray DE analysis
9.3 years ago Bernd Klaus ▴ 610
0
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1
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6.6k
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Comment: C: Correcting for known and surrogate variables in DESeq2
9.3 years ago Bernd Klaus ▴ 610
1
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1
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6.6k
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Answer: A: Correcting for known and surrogate variables in DESeq2
9.3 years ago Bernd Klaus ▴ 610
0
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0
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2.6k
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Comment: C: Paired design, normalisation and batch effects.
9.5 years ago Bernd Klaus ▴ 610
1
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1
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2.6k
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Answer: A: Paired design, normalisation and batch effects.
9.5 years ago Bernd Klaus ▴ 610
1
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1
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2.3k
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Comment: C: Trying to account for gene length in topGO analysis
9.6 years ago Bernd Klaus ▴ 610
2
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1
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2.3k
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Answer: A: Trying to account for gene length in topGO analysis
9.6 years ago Bernd Klaus ▴ 610
1
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2
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2.2k
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Answer: A: Microarray data preprocessing and differentially expressed genes
9.6 years ago Bernd Klaus ▴ 610
1
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0
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4.3k
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Answer: A: DESeq2 and fdrtool: applying FDR correction when the empirical sigma is greater
9.6 years ago Bernd Klaus ▴ 610
1
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0
replies
3.4k
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Comment: C: Is this the correct way of doing a paired t-test in limma using contrasts
9.7 years ago Bernd Klaus ▴ 610
1
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1
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2.7k
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Comment: C: Overriding of shrinkage in DESeq2
9.8 years ago Bernd Klaus ▴ 610
2
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0
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3.2k
views
Answer: A: ribosome profiling and rna seq data with Deseq2 package
9.9 years ago Bernd Klaus ▴ 610
1
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0
replies
15k
views
Answer: A: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
10.0 years ago Bernd Klaus ▴ 610
1
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1
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14k
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Comment: C: DESeq2 and ComBat
10.0 years ago Bernd Klaus ▴ 610
0
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0
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14k
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Comment: C: DESeq2 and ComBat
10.0 years ago Bernd Klaus ▴ 610
0
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1
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14k
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Comment: C: DESeq2 and ComBat
10.0 years ago Bernd Klaus ▴ 610
0
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1
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14k
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Answer: A: DESeq2 and ComBat
10.0 years ago Bernd Klaus ▴ 610
0
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1
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6.1k
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Comment: C: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
10.2 years ago Bernd Klaus ▴ 610
0
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0
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6.1k
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Comment: C: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
10.2 years ago Bernd Klaus ▴ 610
0
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1
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6.1k
views
Answer: A: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
10.2 years ago Bernd Klaus ▴ 610
0
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1
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7.4k
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Comment: C: DeSeq2 - hill–shaped histogram of pvalues
10.4 years ago Bernd Klaus ▴ 610
3
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1
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7.4k
views
Answer: A: DeSeq2 - hill–shaped histogram of pvalues
10.4 years ago Bernd Klaus ▴ 610
2
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1
reply
19k
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Answer: A: using duplicateCorrelation with limma+voom for RNA-seq data
updated 10.7 years ago by 53k • written 11.7 years ago by ▴ 610
0
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1
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2.1k
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Comment: C: Fwd: limma modeling, paired samples
updated 10.8 years ago by 53k • written 11.6 years ago by ▴ 610
2
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2
replies
3.3k
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Answer: A: Help with DESeq2 Multiple Factor Design
10.8 years ago Bernd Klaus ▴ 610
1
vote
0
replies
23k
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Answer: A: Integrating DESeq2 and TopGO for Enrichment
11.0 years ago Bernd Klaus ▴ 610
0
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0
replies
5.7k
views
Answer: A: topGO: How to create gene2GO annotation for mouse?
11.0 years ago Bernd Klaus ▴ 610
1
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0
replies
2.0k
views
Answer: A: ComBat (SVA) Application - Two Technical Effects
11.0 years ago Bernd Klaus ▴ 610
1
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1
reply
5.6k
views
Answer: A: deseq2 - PCA plot
11.1 years ago Bernd Klaus ▴ 610
2
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0
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3.2k
views
Answer: A: topGO: how to visualize gene in GO enriched categories?
updated 11.4 years ago by 25k • written 11.4 years ago by ▴ 610
0
votes
0
replies
3.1k
views
Answer: A: design matrix in limma
11.4 years ago Bernd Klaus ▴ 610
63 results • Page 1 of 2
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